prot_Ecto-sp13_S_contig17489.5252.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17489.5252.1
Unique Nameprot_Ecto-sp13_S_contig17489.5252.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length160
Homology
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: A0A6H5KZW9_9PHAE (XRN_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZW9_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.080e-54
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0
Query:   61 QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMEDVASAMEYYAFQECTRP 158
            QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFM+DVASAMEYYAFQECTRP
Sbjct:   55 QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMDDVASAMEYYAFQECTRP 152          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: A0A836C8H5_9STRA (DRBM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.080e-25
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 0
Query:   61 QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMEDVASAMEYYAF 152
            QILHVA+R++ +E+ AI R F +++  LK   PR+SVVFAFDGSAPLAKLL QR+RRE  +R  +Y+MSAL+++PGT FM   A AM YYA+
Sbjct:   58 QILHVAVRRSANEEQAIARTFTEISQVLKTLEPRRSVVFAFDGSAPLAKLLTQRARREGGRRAERYQMSALNITPGTDFMRSAAEAMRYYAY 149          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: L1JQ07_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ07_GUITC)

HSP 1 Score: 105 bits (261), Expect = 8.540e-25
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 0
Query:   62 ILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMEDVASAMEYYA 151
            +LH A RKA+D +HAI R++++++ TL+   P KSVV AFDG  PLAKLL QR RR  S + SKY++S LH++PGTKFM+ +  A EYYA
Sbjct:    4 LLHTACRKAKDFEHAILRVYKELDATLRTLIPTKSVVLAFDGPGPLAKLLTQRKRRNKSSKASKYKLSGLHITPGTKFMQTMREACEYYA 93          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: A0A7S0E673_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E673_9CRYP)

HSP 1 Score: 102 bits (255), Expect = 1.540e-24
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 0
Query:   62 ILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMEDVASAMEYYA 151
            +LH A R+A+D +HAI +++++++ TL+   P KSVV AFDG  PLAKLL QR RR  S ++SKY++S LH++PGTKFM  +  A EYYA
Sbjct:   14 LLHTACRRAKDFEHAILKVYKELDATLRTLIPTKSVVLAFDGPGPLAKLLTQRKRRSKSSKSSKYKLSGLHITPGTKFMHAMKQACEYYA 103          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: I2CR78_NANGC (5'-3' exoribonuclease 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR78_NANGC)

HSP 1 Score: 89.7 bits (221), Expect = 6.050e-18
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 0
Query:   61 QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMEDVASAM 147
            Q+ H+A RKARDEDHAIRR+ +++  TL+    +KSVV AFDG APLAK++ QR RR   K ++K  +++LHLSPGT FM   A A+
Sbjct:  101 QLTHMAARKARDEDHAIRRLLKELGRTLRVLRAQKSVVIAFDGPAPLAKIITQRKRRAAEK-DAKTPLNSLHLSPGTSFMRRAAEAV 186          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: A0A8J6C9K3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9K3_DIALT)

HSP 1 Score: 85.1 bits (209), Expect = 3.060e-16
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0
Query:   61 QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMEDVASAMEYYA 151
            Q+LH A+RKA D +HA   +F ++NL L+RC P +SVV AFDG AP AKLL QR RR   +R    ++S++ ++PG++FM D+  A  YYA
Sbjct:   70 QVLHHAVRKANDIEHAKVLVFMELNLQLQRCVPTQSVVLAFDGPAPRAKLLTQRRRRAK-RRTLSGKLSSMIITPGSEFMRDMHEACAYYA 159          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: M1US37_CYAM1 (XRN_N domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1US37_CYAM1)

HSP 1 Score: 73.6 bits (179), Expect = 3.090e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0
Query:   59 LMQILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRR--------ENSKRNSKYRMSALHLSPGTKFMEDVASAMEYYAFQECTR 157
            L Q++H+A R AR+ D    R+FR ++  L+ C P+KSV  AFDG APLAKL+ Q+ RR           KR  +  +  L LSPGT+ M+    A+E+Y    C+R
Sbjct:   37 LNQLIHLAARVARNRDQFFIRLFRWLDNILRLCVPKKSVFIAFDGPAPLAKLVTQKRRRVLESRKLHRTRKRKRRCGVDVLSLSPGTELMQLTLQAVEFYV---CSR 140          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: A0A8J9RTM5_9CHLO (Probable 5'-3' exoribonuclease 1 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RTM5_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 3.200e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 0
Query:   59 LMQILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRR----ENSKRNSKYRMSALHLSPGTKFMEDVASAMEYY 150
            +   LH  +RKA D DH   R+   ++ TLK   PRKSVVFA DG APLAKLL QR RR    +   R     +S+L L+PGT  M  +  ++ YY
Sbjct:   32 MASFLHEELRKAEDVDHFHMRLHARLDKTLKLVDPRKSVVFALDGPAPLAKLLTQRMRRRKEAQKEARTGPRPLSSLGLTPGTPLMAMIQESLTYY 127          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: A0A2V3J5K0_9FLOR (5'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K0_9FLOR)

HSP 1 Score: 70.9 bits (172), Expect = 2.680e-11
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 0
Query:   61 QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKY-------------------RMSALHLSPGTKFMEDVASAMEYYAF 152
            QILH A+RKA +       IFR+++  LK C PRKSV FAFDG APLAKL  QR RR   +  S+Y                    +  L ++PG + +  V  ++EY+A+
Sbjct:   39 QILHQAVRKATNRQTLAAAIFRELDQILKNCIPRKSVFFAFDGPAPLAKLATQRRRRRQRRGASEYVSDYIDENGVSRKAKTVQPAIDGLEMTPGVETLYFVRDSVEYWAY 149          
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Match: A0A8J2X6F8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X6F8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.160e-10
Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 0
Query:   61 QILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKY----RMSALHLSPGTKFMEDVASAMEYYAFQECTR 157
            Q +H + R+A  +D A++R++  ++  L+   PRKS+V A DG+AP+AK++ QR RRE +   +       +  L ++PGT FM+ ++ A+E YA +  +R
Sbjct:   74 QYVHTSARRATSQDDAVKRLYAALDGVLRVARPRKSLVLALDGAAPVAKIVTQRKRREANVAKTGVDPHDEVHPLLITPGTVFMDVMSDALERYAVERVSR 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17489.5252.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KZW9_9PHAE1.080e-5498.98XRN_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836C8H5_9STRA3.080e-2558.70DRBM domain-containing protein n=1 Tax=Tribonema m... [more]
L1JQ07_GUITC8.540e-2555.56Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0E673_9CRYP1.540e-2453.33Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
I2CR78_NANGC6.050e-1854.025'-3' exoribonuclease 1 (Fragment) n=1 Tax=Nannoch... [more]
A0A8J6C9K3_DIALT3.060e-1649.45Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
M1US37_CYAM13.090e-1241.12XRN_N domain-containing protein n=1 Tax=Cyanidiosc... [more]
A0A8J9RTM5_9CHLO3.200e-1244.79Probable 5'-3' exoribonuclease 1 at N-terminal hal... [more]
A0A2V3J5K0_9FLOR2.680e-1138.745'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis cho... [more]
A0A8J2X6F8_9STRA3.160e-1035.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004859Putative 5-3 exonucleasePFAMPF03159XRN_Ncoord: 67..154
e-value: 1.0E-10
score: 41.5
IPR0164945'-3' exoribonuclease 1PANTHERPTHR12341:SF75'-3' EXORIBONUCLEASE 1coord: 61..151
IPR0270735'-3' exoribonucleasePANTHERPTHR123415'->3' EXORIBONUCLEASEcoord: 61..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17489contigEcto-sp13_S_contig17489:597..1428 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17489.5252.1mRNA_Ecto-sp13_S_contig17489.5252.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17489 465..3676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17489.5252.1 ID=prot_Ecto-sp13_S_contig17489.5252.1|Name=mRNA_Ecto-sp13_S_contig17489.5252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MYTSLAHTALEARIHAWSCSRWLPALYAKRCDSASCRALVIRNAHPPVCW
LAVVGHPALMQILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFA
FDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMEDVASAMEYY
AFQECTRPW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004859Put_53exo
IPR0164945_3_exoribonuclease_1
IPR0270735_3_exoribonuclease