prot_Ecto-sp13_S_contig17480.5248.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17480.5248.1
Unique Nameprot_Ecto-sp13_S_contig17480.5248.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length111
Homology
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A6H5KK44_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK44_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.370e-68
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            +VFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct:   97 EVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 207          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 3.870e-62
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            +VFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct: 1391 EVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 1501          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S2UWQ5_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ5_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.320e-60
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 0
Query:    1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            +V  TLG+EAAR +ISEEI+YIM AYGI IDRRHLLLL+DVMTFKG++LGITRFGVSKMRESVLMLASFEKTTDHLFDA+VHGR DAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct:   15 EVEQTLGIEAARTMISEEISYIMAAYGIEIDRRHLLLLSDVMTFKGQILGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRTDAIVGVSECIIMGIPIPLGTGLFKLL 125          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A6T7J7L8_9STRA (DNA-directed RNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7J7L8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 9.710e-57
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0
Query:    1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            +V  TLGVEAARI IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDA+VHGR DAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct:  248 EVEQTLGVEAARIKISSEISYIMGAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRSDAIVGVSECIIMGIPIPLGTGLFKLL 358          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7R9WQ13_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ13_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.500e-56
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 0
Query:    6 LGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            LGVEAAR  IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGR DAIVGVSECIIMGIPIP+GTGL  LL
Sbjct:   12 LGVEAARTQISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRTDAIVGVSECIIMGIPIPIGTGLPSLL 117          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A6A4Z455_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z455_9STRA)

HSP 1 Score: 178 bits (452), Expect = 2.910e-55
Identity = 87/111 (78.38%), Postives = 102/111 (91.89%), Query Frame = 0
Query:    1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            +V  TLG+EAAR +I+ E++YIM AYGI IDRRHL+LL+D+MTFKGEVLGITRFG++KM+ESVLMLASFEKTTDHLFDA+VH R DAIVGVSECIIMGIPI +GTG+FKLL
Sbjct:   47 EVEKTLGIEAARFLIASEVSYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIAVGTGIFKLL 157          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S1D4Y3_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y3_CYCTE)

HSP 1 Score: 184 bits (467), Expect = 8.720e-55
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0
Query:    1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            +V  TLGVEAAR  IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKM+ESVLMLASFEKTTDHLFDA+VHGR DAIVGVSECIIMGIPIPLG+GLFKLL
Sbjct:  268 EVEDTLGVEAARTQISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMKESVLMLASFEKTTDHLFDAAVHGRTDAIVGVSECIIMGIPIPLGSGLFKLL 378          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA)

HSP 1 Score: 191 bits (485), Expect = 3.430e-54
Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 0
Query:    1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            +V +TLGVEAAR  IS EI+YIMKAYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGR DAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct: 1297 EVEYTLGVEAARTQISAEISYIMKAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRSDAIVGVSECIIMGIPIPLGTGLFKLL 1407          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S2FDK6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDK6_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.010e-53
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 0
Query:    6 LGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            LG+EAAR  IS+EI+YIM AYGI ID RHL+LL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDA+VH R D IVGVSECIIMG+PIPLGTGLFKLL
Sbjct:  173 LGIEAARTKISDEISYIMAAYGIHIDLRHLMLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHSRRDDIVGVSECIIMGVPIPLGTGLFKLL 278          
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7R9WN59_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN59_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.430e-53
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 0
Query:    6 LGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 111
            LGVEAAR  IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGR DAIVGVSECIIMGIPIP+GTGL  LL
Sbjct:  225 LGVEAARTQISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRTDAIVGVSECIIMGIPIPIGTGLPSLL 330          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK44_9PHAE1.370e-6899.10DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FU80_ECTSI3.870e-6299.10DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2UWQ5_9STRA1.320e-6087.39DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap... [more]
A0A6T7J7L8_9STRA9.710e-5789.19DNA-directed RNA polymerase n=1 Tax=Attheya septen... [more]
A0A7R9WQ13_9STRA2.500e-5688.68DNA-directed RNA polymerase n=1 Tax=Craspedostauro... [more]
A0A6A4Z455_9STRA2.910e-5578.38DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A7S1D4Y3_CYCTE8.720e-5586.49DNA-directed RNA polymerase n=1 Tax=Cyclophora ten... [more]
A0A7S4NGV3_9STRA3.430e-5490.09DNA-directed RNA polymerase subunit n=1 Tax=Odonte... [more]
A0A7S2FDK6_9STRA1.010e-5385.85DNA-directed RNA polymerase n=1 Tax=Florenciella p... [more]
A0A7R9WN59_9STRA1.430e-5388.68DNA-directed RNA polymerase n=1 Tax=Craspedostauro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.390coord: 63..108
e-value: 2.0E-22
score: 80.7
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 1..110
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..110
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..110
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 2..62
e-value: 2.2E-14
score: 53.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17480contigEcto-sp13_S_contig17480:362..2078 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17480.5248.1mRNA_Ecto-sp13_S_contig17480.5248.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17480 362..2078 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17480.5248.1 ID=prot_Ecto-sp13_S_contig17480.5248.1|Name=mRNA_Ecto-sp13_S_contig17480.5248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLG
ITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIP
IPLGTGLFKLL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5