mRNA_Ecto-sp13_S_contig17480.5248.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A6H5KK44_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK44_9PHAE) HSP 1 Score: 214 bits (544), Expect = 1.370e-68 Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 1
Query: 1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
+VFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct: 97 EVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 207
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI) HSP 1 Score: 214 bits (544), Expect = 3.870e-62 Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 1
Query: 1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
+VFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct: 1391 EVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 1501
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S2UWQ5_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ5_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.320e-60 Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 1
Query: 1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
+V TLG+EAAR +ISEEI+YIM AYGI IDRRHLLLL+DVMTFKG++LGITRFGVSKMRESVLMLASFEKTTDHLFDA+VHGR DAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct: 15 EVEQTLGIEAARTMISEEISYIMAAYGIEIDRRHLLLLSDVMTFKGQILGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRTDAIVGVSECIIMGIPIPLGTGLFKLL 125
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A6T7J7L8_9STRA (DNA-directed RNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7J7L8_9STRA) HSP 1 Score: 189 bits (479), Expect = 9.710e-57 Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 1
Query: 1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
+V TLGVEAARI IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDA+VHGR DAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct: 248 EVEQTLGVEAARIKISSEISYIMGAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRSDAIVGVSECIIMGIPIPLGTGLFKLL 358
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7R9WQ13_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ13_9STRA) HSP 1 Score: 179 bits (454), Expect = 2.500e-56 Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 1
Query: 16 LGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
LGVEAAR IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGR DAIVGVSECIIMGIPIP+GTGL LL
Sbjct: 12 LGVEAARTQISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRTDAIVGVSECIIMGIPIPIGTGLPSLL 117
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A6A4Z455_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z455_9STRA) HSP 1 Score: 178 bits (452), Expect = 2.910e-55 Identity = 87/111 (78.38%), Postives = 102/111 (91.89%), Query Frame = 1
Query: 1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
+V TLG+EAAR +I+ E++YIM AYGI IDRRHL+LL+D+MTFKGEVLGITRFG++KM+ESVLMLASFEKTTDHLFDA+VH R DAIVGVSECIIMGIPI +GTG+FKLL
Sbjct: 47 EVEKTLGIEAARFLIASEVSYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIAVGTGIFKLL 157
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S1D4Y3_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y3_CYCTE) HSP 1 Score: 184 bits (467), Expect = 8.720e-55 Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 1
Query: 1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
+V TLGVEAAR IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKM+ESVLMLASFEKTTDHLFDA+VHGR DAIVGVSECIIMGIPIPLG+GLFKLL
Sbjct: 268 EVEDTLGVEAARTQISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMKESVLMLASFEKTTDHLFDAAVHGRTDAIVGVSECIIMGIPIPLGSGLFKLL 378
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA) HSP 1 Score: 191 bits (485), Expect = 3.430e-54 Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 1
Query: 1 QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
+V +TLGVEAAR IS EI+YIMKAYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGR DAIVGVSECIIMGIPIPLGTGLFKLL
Sbjct: 1297 EVEYTLGVEAARTQISAEISYIMKAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRSDAIVGVSECIIMGIPIPLGTGLFKLL 1407
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7S2FDK6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDK6_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.010e-53 Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 1
Query: 16 LGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
LG+EAAR IS+EI+YIM AYGI ID RHL+LL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDA+VH R D IVGVSECIIMG+PIPLGTGLFKLL
Sbjct: 173 LGIEAARTKISDEISYIMAAYGIHIDLRHLMLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHSRRDDIVGVSECIIMGVPIPLGTGLFKLL 278
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Match: A0A7R9WN59_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN59_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.430e-53 Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 1
Query: 16 LGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLL 333
LGVEAAR IS EI+YIM AYGI ID RHLLLL+DVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGR DAIVGVSECIIMGIPIP+GTGL LL
Sbjct: 225 LGVEAARTQISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRTDAIVGVSECIIMGIPIPIGTGLPSLL 330 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17480.5248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17480.5248.1 >prot_Ecto-sp13_S_contig17480.5248.1 ID=prot_Ecto-sp13_S_contig17480.5248.1|Name=mRNA_Ecto-sp13_S_contig17480.5248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp QVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGback to top mRNA from alignment at Ecto-sp13_S_contig17480:362..2078- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17480.5248.1 ID=mRNA_Ecto-sp13_S_contig17480.5248.1|Name=mRNA_Ecto-sp13_S_contig17480.5248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17480:362..2078- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17480:362..2078- >mRNA_Ecto-sp13_S_contig17480.5248.1 ID=mRNA_Ecto-sp13_S_contig17480.5248.1|Name=mRNA_Ecto-sp13_S_contig17480.5248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17480:362..2078- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |