prot_Ecto-sp13_S_contig1747.5238.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1747.5238.1
Unique Nameprot_Ecto-sp13_S_contig1747.5238.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length512
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1747.5238.1 vs. uniprot
Match: D7FK10_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK10_ECTSI)

HSP 1 Score: 580 bits (1495), Expect = 4.690e-202
Identity = 498/511 (97.46%), Postives = 501/511 (98.04%), Query Frame = 0 
Query:    1 MLRLLYLAFLYKKNGGQCDVFCRAETAVVGTPRRKWEVPELKARLTRDTFSSSLALSSIAADIDVVTDWFFYFSDEIQNDASFEGLKEVSLFFTLFGTLTWVLLATDCPGWLRNGTCPDTTGRAGRYFSWPLLNVVLEDLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHMTATAKGRVESVIELKNALLGKKQEAELLAPLISSANADEPESMRMAWKVARDHHWWADQLQLSKIEFISEESDDSFQFLEGRIPKGLGAAKELVTLCIQRQNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEALSKLTNLTELDISDNRFEEPDCIRSQESLERHLPHASVKIAR 511
            MLRLLYLAFLYKKNGGQCDVFCRAETA VGTPRRKWEVPELKARLTRDT SSSLALSSIAADIDVVTDWFFYFSDE+QNDASFEGLKE SLFFTLFGTLTWVLLATDCPGWLRNG CPDTTGRAGRYFSWPLLNVVLEDLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHM ATAKGRVESVIELKNALLGKKQEAE+LAPLISSANADEPESMRMAW+VARDHHWWADQLQLSKIEFISEESD SF FLEGRIPKGLGAAKELVTLCIQRQNL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEALSKLTNLTELDISDNRFEEPDC RSQESLERHLPHASVKI R
Sbjct:    1 MLRLLYLAFLYKKNGGQCDVFCRAETAAVGTPRRKWEVPELKARLTRDTVSSSLALSSIAADIDVVTDWFFYFSDEVQNDASFEGLKEASLFFTLFGTLTWVLLATDCPGWLRNGACPDTTGRAGRYFSWPLLNVVLEDLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHMAATAKGRVESVIELKNALLGKKQEAEVLAPLISSANADEPESMRMAWEVARDHHWWADQLQLSKIEFISEESDHSFPFLEGRIPKGLGAAKELVTLCIQRQNLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEALSKLTNLTELDISDNRFEEPDCTRSQESLERHLPHASVKIER 511
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BLAST of mRNA_Ecto-sp13_S_contig1747.5238.1 vs. uniprot
Match: A0A6H5KG73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG73_9PHAE)

HSP 1 Score: 518 bits (1335), Expect = 6.030e-181
Identity = 263/293 (89.76%), Postives = 272/293 (92.83%), Query Frame = 0 
Query:    1 MLRLLYLAFLYKKNGGQCDVFCRAETAVVGTPRRKWEVPELKARLTRDTFSSSLALSSIAADIDVVTDWFFYFSDEIQNDASFEGLKEVSLFFTLFGTLTWVLLATDCPGWLRNGTCPDTTGRAGRYFSWPLLNVVLEDLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHMTATAKGRVESVIELKNALLGKKQEAELLAPLISSANADEPESMRMAWKVARDHHWWADQLQLSKIEFISEESDDSFQFLEGRIPKGLGAAKELVTLCIQRQNL 293
            MLRLLYLAFLYKKNGGQCDV CRAETAVVGTPRRKWEVPELKARLTRDT SSSLALSSIAADIDVVTDWFF+FSDEIQNDASFEG+KEVSLFFTLFGTLTWVLLA DCPGWLRNG CPDTTGRAGRY SWPLLN VLE LPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPR+FHMTATAKGRVES I+LKNALLGKKQEAE+LAPLISSANADEPES+RMAW+VARDHHWWADQLQLSKIEF+SEESDDSFQFLEG I   LG    L TL +   NL
Sbjct:    1 MLRLLYLAFLYKKNGGQCDVCCRAETAVVGTPRRKWEVPELKARLTRDTVSSSLALSSIAADIDVVTDWFFFFSDEIQNDASFEGVKEVSLFFTLFGTLTWVLLAMDCPGWLRNGACPDTTGRAGRYLSWPLLNAVLEFLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRIFHMTATAKGRVESTIDLKNALLGKKQEAEVLAPLISSANADEPESVRMAWEVARDHHWWADQLQLSKIEFVSEESDDSFQFLEGSIQLELGELANLETLNLPWNNL 293
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BLAST of mRNA_Ecto-sp13_S_contig1747.5238.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 8.180e-10
Identity = 59/180 (32.78%), Postives = 91/180 (50.56%), Query Frame = 0 
Query:   56 LSSIAADIDVVTDWFFYFSDEIQNDASFEGLKEVSLFFTLFGTLTWVLLA------TDCPGWLRNGTCPDTTGRAGRYFSWPLL-NVVLEDLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHMTATAKGRVESVIELKNALLGKKQEAELLAPLISSANAD 228
            L+S+ +D+D+  DW  YF  E   DA  E + +V+   T+ GT+ +VLL       ++   W R G              W LL NVV+ED+PQL IT +T+  T+VAG +NIA + F+ LAK AE  A+  +  +     M  T  G V+ ++  ++        A  LA L++   A+
Sbjct:  140 LTSVVSDLDLFADW--YFLQEGLEDAQ-ELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVP--LGWQLLLNVVVEDIPQLVITWVTSP-TSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAE 313
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1747.5238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK10_ECTSI4.690e-20297.46Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KG73_9PHAE6.030e-18189.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK13_ECTSI8.180e-1032.78Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 306..325
e-value: 0.047
score: 14.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 378..435
e-value: 1.1E-7
score: 31.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 402..425
score: 6.133
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 475..496
score: 6.364
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 378..400
score: 5.225
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 330..350
score: 4.709
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 450..471
score: 5.479
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 306..328
score: 7.05
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 376..503
e-value: 1.2E-29
score: 105.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 326..375
e-value: 3.0E-12
score: 48.4
coord: 205..325
e-value: 1.7E-15
score: 58.9
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 269..371
coord: 321..419
coord: 417..486
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 269..371
coord: 321..419
coord: 417..486
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 268..489

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1747contigEcto-sp13_S_contig1747:1075..6744 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1747.5238.1mRNA_Ecto-sp13_S_contig1747.5238.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1747 2..7330 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1747.5238.1 ID=prot_Ecto-sp13_S_contig1747.5238.1|Name=mRNA_Ecto-sp13_S_contig1747.5238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=512bp
MLRLLYLAFLYKKNGGQCDVFCRAETAVVGTPRRKWEVPELKARLTRDTF
SSSLALSSIAADIDVVTDWFFYFSDEIQNDASFEGLKEVSLFFTLFGTLT
WVLLATDCPGWLRNGTCPDTTGRAGRYFSWPLLNVVLEDLPQLAITGMTT
GFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHMTATAKGRVES
VIELKNALLGKKQEAELLAPLISSANADEPESMRMAWKVARDHHWWADQL
QLSKIEFISEESDDSFQFLEGRIPKGLGAAKELVTLCIQRQNLSGSIPPE
LGELANLETLNLSRNNLTGGIPNELIQLARLQTLMLNNNNLNGPIPARLG
EMPSLVGLHLQQNKLSGPVPSASVVPASLKLLDLWNNELTGYIPDTLGTR
TNLERLILSSNRIDGTLPATLANLTNLTKLFIRKSRLTGDIPPQLSRLVK
LKELSFFNNELSGPIPVEALSKLTNLTELDISDNRFEEPDCIRSQESLER
HLPHASVKIAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf