mRNA_Ecto-sp13_S_contig17467.5236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17467.5236.1
Unique NamemRNA_Ecto-sp13_S_contig17467.5236.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Match: D7G5S5_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S5_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.270e-36
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 DGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQ 192
            DGLVVVKFHA+LCDASRAVEGRF+QTAAEFGDMD KQVTFADVCFDSNRQLCKRMGIKSVPHVQ
Sbjct:  102 DGLVVVKFHAILCDASRAVEGRFRQTAAEFGDMDNKQVTFADVCFDSNRQLCKRMGIKSVPHVQ 165
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BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Match: D7FJA4_ECTSI (Thioredoxin/AMP-activated kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.890e-16
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    7 LVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQ 192
            LVVVKF   LC AS+AVE +FKQTAAEF + D   V FA V   SN  LCK+MG++SVPHVQ
Sbjct:   76 LVVVKFGKALCKASKAVEEKFKQTAAEFSECDKTDVQFASVDSGSNWLLCKKMGVRSVPHVQ 137
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BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Match: A0A7S1TB32_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TB32_9RHOD)

HSP 1 Score: 51.2 bits (121), Expect = 2.090e-6
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    7 LVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQ 192
            L+V+KF A  C + + V+ + K+ A EF      QV F ++ FD NR+LC+R+G+ S+P  Q
Sbjct:   65 LLVLKFKARWCRSCQGVDAKVKRLAREF-----PQVRFCEMDFDDNRELCRRLGVTSLPTFQ 121
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BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Match: A0A7S1TN71_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN71_9RHOD)

HSP 1 Score: 52.0 bits (123), Expect = 2.110e-6
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    7 LVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVP 183
            LVV+KF+A  C + +A+E + K+ A E+      ++ F +V F  N +LC+R+G+KS+P
Sbjct:  102 LVVIKFYAPWCRSCKAMEPKVKRLAREY-----PEILFCEVDFQENHELCRRIGVKSIP 155
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BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Match: R1F693_EMIHU (Thioredoxin domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F693_EMIHU)

HSP 1 Score: 49.3 bits (116), Expect = 6.420e-6
Identity = 21/62 (33.87%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    7 LVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQ 192
            +V +KF+A  C A +A+  ++K+ A ++      ++ F +V FD+N+ LCK +GIK +P+++
Sbjct:   23 VVCIKFYASWCRACKAMAPKYKRVADDW-----PEIEFCEVLFDTNKALCKGLGIKVLPYIE 79
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BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Match: A0A7S3WN14_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WN14_EMIHU)

HSP 1 Score: 49.3 bits (116), Expect = 2.390e-5
Identity = 21/62 (33.87%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    7 LVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQ 192
            +V +KF+A  C A +A+  ++K+ A ++      ++ F +V FD+N+ LCK +GIK +P+++
Sbjct:  104 VVCIKFYASWCRACKAMAPKYKRVADDW-----PEIEFCEVLFDTNKALCKGLGIKVLPYIE 160
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BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Match: R1D6T1_EMIHU (Thioredoxin domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6T1_EMIHU)

HSP 1 Score: 49.3 bits (116), Expect = 2.640e-5
Identity = 21/62 (33.87%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    7 LVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQLCKRMGIKSVPHVQ 192
            +V +KF+A  C A +A+  ++K+ A ++      ++ F +V FD+N+ LCK +GIK +P+++
Sbjct:  101 VVCIKFYASWCRACKAMAPKYKRVADDW-----PEIEFCEVLFDTNKALCKGLGIKVLPYIE 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17467.5236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G5S5_ECTSI1.270e-3695.31Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
D7FJA4_ECTSI3.890e-1662.90Thioredoxin/AMP-activated kinase n=1 Tax=Ectocarpu... [more]
A0A7S1TB32_9RHOD2.090e-640.32Hypothetical protein (Fragment) n=2 Tax=Compsopogo... [more]
A0A7S1TN71_9RHOD2.110e-638.98Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
R1F693_EMIHU6.420e-633.87Thioredoxin domain-containing protein n=1 Tax=Emil... [more]
A0A7S3WN14_EMIHU2.390e-533.87Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1D6T1_EMIHU2.640e-533.87Thioredoxin domain-containing protein n=1 Tax=Emil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17467contigEcto-sp13_S_contig17467:2427..2618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score130.6
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog2880.D7G5S5
Model size192
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Thioredoxin
EggNOG OGs2D09X@1,2SDCR@2759
Cds size192
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462909.8540514-CDS-Ecto-sp13_S_contig17467:2426..26181681462909.8540514-CDS-Ecto-sp13_S_contig17467:2426..2618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17467 2427..2618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17467.5236.1prot_Ecto-sp13_S_contig17467.5236.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17467 2427..2618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17467.5236.1

>prot_Ecto-sp13_S_contig17467.5236.1 ID=prot_Ecto-sp13_S_contig17467.5236.1|Name=mRNA_Ecto-sp13_S_contig17467.5236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
DGLVVVKFHAVLCDASRAVEGRFKQTAAEFGDMDGKQVTFADVCFDSNRQ
LCKRMGIKSVPHVQ
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mRNA from alignment at Ecto-sp13_S_contig17467:2427..2618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17467.5236.1 ID=mRNA_Ecto-sp13_S_contig17467.5236.1|Name=mRNA_Ecto-sp13_S_contig17467.5236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17467:2427..2618+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGTCTCGTCGTGGTCAAGTTCCACGCCGTCCTGTGCGACGCTTCGAG
GGCGGTCGAGGGGAGGTTTAAGCAGACCGCGGCGGAGTTTGGCGACATGG
ACGGCAAGCAGGTCACCTTCGCTGACGTGTGCTTCGACAGCAACCGGCAG
CTGTGCAAGAGGATGGGGATCAAGTCCGTTCCCCACGTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17467:2427..2618+

>mRNA_Ecto-sp13_S_contig17467.5236.1 ID=mRNA_Ecto-sp13_S_contig17467.5236.1|Name=mRNA_Ecto-sp13_S_contig17467.5236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17467:2427..2618+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGTCTCGTCGTGGTCAAGTTCCACGCCGTCCTGTGCGACGCTTCGAG
GGCGGTCGAGGGGAGGTTTAAGCAGACCGCGGCGGAGTTTGGCGACATGG
ACGGCAAGCAGGTCACCTTCGCTGACGTGTGCTTCGACAGCAACCGGCAG
CTGTGCAAGAGGATGGGGATCAAGTCCGTTCCCCACGTCCAG
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