prot_Ecto-sp13_S_contig17457.5233.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17457.5233.1
Unique Nameprot_Ecto-sp13_S_contig17457.5233.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length202
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 5.200e-112
Identity = 177/199 (88.94%), Postives = 180/199 (90.45%), Query Frame = 0 
Query:    1 MGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVASV 199
            MGDG G EESRPSR+  ERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLR GWVVRDAAA G  GGD  AGGEK  RNV RVDDDFVYDGGR SSSSTL AGS AGNVGDHGRTSPGRGL D RGGGHEDRTA+VASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWK+CDQEQDGGVAS 
Sbjct:  338 MGDGGGVEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRLGWVVRDAAATGSHGGDVGAGGEKSGRNVDRVDDDFVYDGGRRSSSSTLGAGSAAGNVGDHGRTSPGRGLPDYRGGGHEDRTAEVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKKCDQEQDGGVASA 536
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BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 6.390e-112
Identity = 177/201 (88.06%), Postives = 184/201 (91.54%), Query Frame = 0 
Query:    1 MGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVASVDR 201
            MGDGAG EESRPSR+  ERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEG+R+GWVVRD AARG RGGDA AGGEKG RNVGRVDDDFVYDGGRGSSS TL AGS AG+VGDHGRTSPGRG  DDR GG EDR A+VAS+ GPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVA+ DR
Sbjct:  397 MGDGAGAEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGMRQGWVVRDTAARGSRGGDAGAGGEKGGRNVGRVDDDFVYDGGRGSSS-TLGAGSAAGDVGDHGRTSPGRGFPDDRSGGQEDRRAEVASDGGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVAAADR 596
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K982_9PHAE5.200e-11288.94Radical SAM core domain-containing protein n=1 Tax... [more]
D7FRC0_ECTSI6.390e-11288.06Radical S-adenosyl methionine domain-containing pr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034505Anaerobic coproporphyrinogen-III oxidasePANTHERPTHR13932COPROPORPHYRINIGEN III OXIDASEcoord: 13..182
NoneNo IPR availablePANTHERPTHR13932:SF16coord: 13..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17457contigEcto-sp13_S_contig17457:215..1178 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17457.5233.1mRNA_Ecto-sp13_S_contig17457.5233.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17457 2..1485 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17457.5233.1 ID=prot_Ecto-sp13_S_contig17457.5233.1|Name=mRNA_Ecto-sp13_S_contig17457.5233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
MGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAA
RRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVY
DGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASN
SGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVASVD
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034505Coproporphyrinogen-III_oxidase