mRNA_Ecto-sp13_S_contig17457.5233.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE) HSP 1 Score: 483 bits (1243), Expect = 1.200e-165 Identity = 247/274 (90.15%), Postives = 251/274 (91.61%), Query Frame = 1
Query: 1 SRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVAS--VDR 816
SRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWV ELEEEGWAKATGAPRR ACEEVL GGGGMGDG G EESRPSR+ ERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLR GWVVRDAAA G GGD AGGEK RNV RVDDDFVYDGGR SSSSTL AGS AGNVGDHGRTSPGRGL D RGGGHEDRTA+VASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWK+CDQEQDGGVAS +DR
Sbjct: 267 SRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVGELEEEGWAKATGAPRRTACEEVLPGGGGMGDGGGVEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRLGWVVRDAAATGSHGGDVGAGGEKSGRNVDRVDDDFVYDGGRRSSSSTLGAGSAAGNVGDHGRTSPGRGLPDYRGGGHEDRTAEVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKKCDQEQDGGVASAKIDR 540
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI) HSP 1 Score: 481 bits (1239), Expect = 3.020e-164 Identity = 244/272 (89.71%), Postives = 252/272 (92.65%), Query Frame = 1
Query: 1 SRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVASVDR 816
SRHNRAYWENVPFLAFGNGAASFVDG+RFSRPRGLPEYGQWV ELEEEGW KATGAPRRAACEEVL GGGGMGDGAG EESRPSR+ ERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEG+R+GWVVRD AARG RGGDA AGGEKG RNVGRVDDDFVYDGGRGSSS TL AGS AG+VGDHGRTSPGRG DDR GG EDR A+VAS+ GPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVA+ DR
Sbjct: 326 SRHNRAYWENVPFLAFGNGAASFVDGYRFSRPRGLPEYGQWVGELEEEGWDKATGAPRRAACEEVLPGGGGMGDGAGAEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGMRQGWVVRDTAARGSRGGDAGAGGEKGGRNVGRVDDDFVYDGGRGSSS-TLGAGSAAGDVGDHGRTSPGRGFPDDRSGGQEDRRAEVASDGGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRCDQEQDGGVAAADR 596
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: A0A0G4H4P5_VITBC (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H4P5_VITBC) HSP 1 Score: 91.3 bits (225), Expect = 2.300e-16 Identity = 86/262 (32.82%), Postives = 111/262 (42.37%), Query Frame = 1
Query: 4 RHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAAC-EEVLLGGGGMGDGAGEEESRPSRDGRE--RDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTA--DVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELD--GW 768
RHN AYWENVPF AFGNGAASF +RFSRPR L +Y WV LE EG+ A G A +E + +G ++ + ++ E R+ L D +MLG RLK G+ L +A +G A G+ R A RG+ RV F R D G +D T+ D G G + L+DP+GFL SN VISS+F +D GW
Sbjct: 352 RHNMAYWENVPFFAFGNGAASFTSLYRFSRPRRLQDYRVWVDRLEREGFLHAAGFHSLAELWDESIHRYEKTHEGTHVDDGQHAQMYSELRRECLSDGLMLGLRLKSGISLSRIAKAHGTDAV--------NGILRAIDQSSAIERGLV----------------RV---FC------------------------------RPRCDSDSGDEKDLTSGGDALRVMGEGGREVGVCLTDPEGFLLSNDVISSMFACIDQMGW 556
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: A0A836CMJ4_9STRA (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ4_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 4.730e-15 Identity = 58/136 (42.65%), Postives = 67/136 (49.26%), Query Frame = 1
Query: 1 SRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEG-WAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRG 405
S HNRAYWEN +LAFGNGAAS V RFSRPR L EY WV +LE WA ATG GE S A ++ +MLG RL EG+DL + + G RV GA EG+ G
Sbjct: 272 SAHNRAYWENRHYLAFGNGAASHVARARFSRPRRLQEYEAWVEQLESSNDWASATG---------------------GEPMDSES-------AAIEGLMLGLRLSEGVDLDKLREEVGAEWVERVLRGAREGVEGG 379
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: K9S4J9_9CYAN (Heme chaperone HemW n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S4J9_9CYAN) HSP 1 Score: 86.3 bits (212), Expect = 5.960e-15 Identity = 53/141 (37.59%), Postives = 68/141 (48.23%), Query Frame = 1
Query: 4 RHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAA 426
RHNR YWEN PF FG GAAS +DG RF+RPR EY W+ E + P+ A A E PS E D LLD +MLG RL EG+D +A ++G + + + + GWV D+A
Sbjct: 258 RHNRVYWENQPFYGFGMGAASCLDGQRFTRPRTRSEYFAWIDRYEAD--------PQGAI--------------ADPENPAPS----ETDRLLDTLMLGLRLAEGVDAGAIAQRFGPAVLTSIHQTLAPYEQEGWVAWDSA 372
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: K9VZK7_9CYAN (Heme chaperone HemW n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VZK7_9CYAN) HSP 1 Score: 86.3 bits (212), Expect = 6.900e-15 Identity = 66/253 (26.09%), Postives = 103/253 (40.71%), Query Frame = 1
Query: 4 RHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVD-DDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCEL 759
RHNR YWEN P+ AFG GA+S+VDG RF+RPR EY +WV +L + C ++ E + LL+ +MLG R+ EGL L+ +A ++G +++ + + ++GWV E D+N G + + Y +N P G +RLSDP+GFLFSN++++++F +L
Sbjct: 272 RHNRVYWENRPYYAFGMGASSYVDGCRFTRPRKTREYYEWVQQLTQNNGT--------FECPQIS----------------------ENEVLLETLMLGLRMAEGLSLQTLAEQFGEETIQQIWDCLQDYCKQGWV------------------EILDKNCGLIKLGEIKY------------------------------------------------NNQFPNA--GRIRLSDPEGFLFSNTILATLFSKL 426
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: UPI001A065068 (Coproporphyrinogen III oxidase n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A065068) HSP 1 Score: 84.7 bits (208), Expect = 2.260e-14 Identity = 53/144 (36.81%), Postives = 68/144 (47.22%), Query Frame = 1
Query: 4 RHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARG 435
+HNR YWEN P+ FG GAASF+ GHRF+RPR Y +WV L E ++V MGD LLD +MLG RL EG+DL V+A+ +G + R+ +GWV DA G
Sbjct: 278 QHNRVYWENRPYYGFGLGAASFIHGHRFTRPRKRQAYEEWVQGLTET-----------RVIQQVQT----MGD-----------------RLLDTLMLGLRLAEGIDLTVIAADFGDAILNRLLSVVAPFQEQGWVAVDAPKEG 389
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: A0A2P6TFS6_CHLSO (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TFS6_CHLSO) HSP 1 Score: 85.9 bits (211), Expect = 2.450e-14 Identity = 57/144 (39.58%), Postives = 73/144 (50.69%), Query Frame = 1
Query: 4 RHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKY--GHSAARRVEEGATEGLRRGWVVRDAAA 429
RHN YWE +P+ AFG GAAS+++G RFSRP+ L Y QWV + +G A+ AG R S D D LLD VML RL +GLDLR +A+++ G AA V + RGWV+ D A
Sbjct: 4164 RHNMVYWEGLPYYAFGMGAASYLEGRRFSRPKRLNAYRQWVEQYAGDGEAQDPQV-------------------AGSWLPRESGD----DRLLDTVMLRLRLADGLDLRQLATQHAQGEEAADIVLHALQPHIARGWVLADRGA 4284
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: UPI00177D00C7 (Coproporphyrinogen III oxidase n=1 Tax=Microcoleus sp. FACHB-SPT15 TaxID=2692830 RepID=UPI00177D00C7) HSP 1 Score: 84.3 bits (207), Expect = 2.890e-14 Identity = 72/253 (28.46%), Postives = 98/253 (38.74%), Query Frame = 1
Query: 4 RHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWV-VRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCEL 759
RHNR YWEN P+ FG GAAS+V G+RF+RPR EY WV +L + G +P +A D LL+ +MLG RL EGL L + +++G + + RRGWV V +A+ G+AV ED A + G LRLSDP+GFLFSN+V++ +F +L
Sbjct: 268 RHNRVYWENRPYYGFGMGAASYVQGYRFTRPRTRREYYAWVQQLIDAGGV--LDSPETSAA----------------------------DILLETLMLGLRLAEGLSLDKLRNQFGEKTLKEIWTSLQPHYRRGWVEVLNAS------GEAV-----------------------------------------------------------EDTQAVPTT--------GQLRLSDPEGFLFSNTVLADLFSQL 417
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Match: UPI00034C0789 (radical SAM family heme chaperone HemW n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00034C0789) HSP 1 Score: 84.0 bits (206), Expect = 4.240e-14 Identity = 68/249 (27.31%), Postives = 98/249 (39.36%), Query Frame = 1
Query: 4 RHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVCELEEEGWAKATGAPRRAACEEVLLGGGGMGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRRGWVVRDAAARGIRGGDAVAGGEKGDRNVGRVDDDFVYDGGRGSSSSTLDAGSVAGNVGDHGRTSPGRGLADDRGGGHEDRTADVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVF 750
RHNR YWEN P+ FG GA S+V GHR +RPR EY +WV + + ++ P + E + + AG +S D LL+ +MLG RL EG+ L A ++G +++ + R+GWV I GGD V A + P W LRLSDP+GFLFSN++++++F
Sbjct: 271 RHNRVYWENRPYYGFGMGATSYVGGHRLTRPRKTWEYSEWV---QSQAERRSPQPPLQRGAVETAI------EDAGTSDS---------DILLETLMLGLRLAEGVSLPAFAEQFGTGTLQKICQCLQPYCRQGWVE-------IVGGDGVP-------------------------------------------------------------VAVSDCHQLPAQGW--LRLSDPEGFLFSNTILAALF 431 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17457.5233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17457.5233.1 >prot_Ecto-sp13_S_contig17457.5233.1 ID=prot_Ecto-sp13_S_contig17457.5233.1|Name=mRNA_Ecto-sp13_S_contig17457.5233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp MGDGAGEEESRPSRDGRERDALLDDVMLGFRLKEGLDLRVVASKYGHSAAback to top mRNA from alignment at Ecto-sp13_S_contig17457:2..1485+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17457.5233.1 ID=mRNA_Ecto-sp13_S_contig17457.5233.1|Name=mRNA_Ecto-sp13_S_contig17457.5233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17457:2..1485+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17457:2..1485+ >mRNA_Ecto-sp13_S_contig17457.5233.1 ID=mRNA_Ecto-sp13_S_contig17457.5233.1|Name=mRNA_Ecto-sp13_S_contig17457.5233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17457:2..1485+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |