mRNA_Ecto-sp13_S_contig1744.5226.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1744.5226.1
Unique NamemRNA_Ecto-sp13_S_contig1744.5226.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1744.5226.1 vs. uniprot
Match: A0A6H5JIQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ6_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.330e-42
Identity = 100/149 (67.11%), Postives = 106/149 (71.14%), Query Frame = 1 
Query:  418 QPMVGPATSTGFGDTAAAAADFDPLPPARAATAARGIQNARGANGQQAFSEGTEETLGGSSEGRRNSDGSAGSGGACVAKAAIVEGGG----------SGRPGAVAAKPPGRQRAGDRRAARLGNNAAESEQGMTSKPPKTAGCGCSVS 834
            QP VGPATSTGFGDTA AA +FDPLPPA AAT ARGI+NARG NGQ A SEG EE  GGSS GRRNSDG A SGG     A                 SGRPGA A +PPGRQRAGD RAA LG+N A+SEQGM SKPPKTAGC CS+S
Sbjct:  377 QPTVGPATSTGFGDTAVAA-EFDPLPPATAATVARGIKNARGVNGQHACSEGAEEAFGGSSAGRRNSDGRADSGGVSGETAGXXXXXXXXXXXXXXXXSGRPGAAAVRPPGRQRAGDGRAASLGSNGADSEQGMASKPPKTAGCSCSIS 524
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1744.5226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIQ6_9PHAE1.330e-4267.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1744contigEcto-sp13_S_contig1744:9389..13131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size837
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_001495.1
Cds size837
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462909.049651-CDS-Ecto-sp13_S_contig1744:9388..94601681462909.049651-CDS-Ecto-sp13_S_contig1744:9388..9460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1744 9389..9460 -
1681462909.0614614-CDS-Ecto-sp13_S_contig1744:12366..131311681462909.0614614-CDS-Ecto-sp13_S_contig1744:12366..13131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1744 12367..13131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1744.5226.1prot_Ecto-sp13_S_contig1744.5226.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1744 9389..13131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1744.5226.1

>prot_Ecto-sp13_S_contig1744.5226.1 ID=prot_Ecto-sp13_S_contig1744.5226.1|Name=mRNA_Ecto-sp13_S_contig1744.5226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
AAGRGLDGEQQAGGDGGRVPDGGGSGGGGAVDSLPRSSDQQQQQQQQQQQ
YLQRKCSSGSSRGTSSREGGGSGAGVPKRREEQRDDCCESGGSTAAGIIS
KSHVLAEQQQQQQQQQQQQQQQQQRRGRGRQQGEPRRQQQPMVGPATSTG
FGDTAAAAADFDPLPPARAATAARGIQNARGANGQQAFSEGTEETLGGSS
EGRRNSDGSAGSGGACVAKAAIVEGGGSGRPGAVAAKPPGRQRAGDRRAA
RLGNNAAESEQGMTSKPPKTAGCGCSVS*
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mRNA from alignment at Ecto-sp13_S_contig1744:9389..13131-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1744.5226.1 ID=mRNA_Ecto-sp13_S_contig1744.5226.1|Name=mRNA_Ecto-sp13_S_contig1744.5226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3743bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1744:9389..13131- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGGGAGGGGGTTGGATGGGGAGCAGCAGGCGGGCGGGGACGGTGG
TCGTGTCCCTGACGGCGGTGGGTCGGGCGGGGGAGGGGCGGTGGACAGCT
TGCCCCGGTCATCAGATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TACCTGCAACGGAAATGTAGTAGCGGCAGTTCCCGCGGCACAAGTAGCCG
AGAAGGTGGAGGGTCTGGCGCCGGGGTTCCGAAACGGCGGGAGGAGCAAC
GCGACGATTGTTGTGAAAGCGGCGGAAGCACGGCGGCCGGCATCATCAGC
AAGAGCCACGTTCTGGCGGAACAGCAGCAGCAGCAGCAGCAGCAGCAACA
GCAGCAGCAGCAACAGCAGCAACGGCGAGGACGAGGACGACAACAAGGAG
AGCCCCGACGACAACAACAGCCGATGGTCGGGCCGGCAACGTCCACCGGT
TTCGGAGACACGGCCGCCGCCGCCGCAGATTTCGACCCGCTGCCACCAGC
AAGGGCAGCAACGGCAGCCCGAGGGATTCAAAACGCACGAGGGGCGAACG
GCCAGCAAGCCTTTAGCGAGGGTACCGAAGAAACGCTCGGAGGTTCCTCC
GAGGGGCGGCGGAATTCGGACGGGAGTGCCGGTTCGGGGGGGGCGTGTGT
CGCGAAAGCGGCGATTGTGGAGGGGGGGGGGTCTGGGAGACCCGGCGCCG
TTGCCGCGAAGCCACCAGGGCGCCAGCGGGCGGGGGACAGGCGAGCCGCC
AGGCTCGGAAACAACGTGAGAGAGGGGCTTCGTTCGGTGTATCACTCACA
CATGCCATGGCTGGTGTTTTTGTCGTCTTGGCCGATCGATGGTATGGTCC
ATGCCTAACGGTGATGTTCTTTCTAGTCCGCTACACACAGGCGTTGCTTT
GTCCGGTTCGTGTTTCGCTAGGTAGCGTATGCAGTGACCGTATGGACCAC
GCTCGATGAGGGTTGATTGACGTAACAGCGAAGCCATTTACGGGGGATAA
AACGCAACATTGAAGCATACTTCTTGCGTGAGGGTGCTGCATTTGCCTTG
CCACAAACCAACCAACCAAGCACATGTTCTTTTTTTTCTTGCTTTTTGTC
TCAACTTCGAATCAGCGCTCACAGCACTTGTGCCGTTTACTCCGACCCGT
GGTCACACAGAAGGGTTCCTCTCCCTGACGCCCCCTGCCCTACCCACCGC
TTTTGCGGTACTTCACTTTGATTTGGTAATGTGAGAAGCGTACACACCCT
CTGTGTGCACATGAACTAGCGCTTTCCACGCAGGTCAGGAACGGAACCGA
GAAAAAACTCACTTTGCAAGAAAACCTCACCGACACCGGGATTTGAACAC
ATGACCCTGCCCATCAGATGATTTTCGACCATGCTCAGAAGTGTGAAATG
TTTTTTTGTATGTCGCTGCCACTCTCCCCCGCGTATGAGATTTTTGGTTT
ACCTTTCGTTCTCATGTTGTTTCGAAAGATATCATGACACGCACGTTTCT
GATTGGTCGATAAGCCGCCCTCTCCGAAGCGATCGTCGATTTCCGCCATC
CGCGGACCTTCGGTCGGCACCGCCAGTTTTTTTTTGTCACGAAAGACTAT
TTTCTTTTACAAATCAGAAAACAGCGTGCCACAGTACAGTAGTTCCTTTT
TACCGCGCTAGGGTTCTTTCGACGCTGCCGCCTGTTCGTCTTGGAAGCTG
TAAGAGGCGGAGAGATGGGCACCCCCCCCCCCCCAAGCCCCTCCCCAGAC
CTGTTTTCGAAGCTCGATTTCTTCGTGACCAAGATCGCGTCAACACCTAC
GATGGTCGTGGTTTTGGAACGTATCGTCGAGGGACTTCCGTTGACGTGTC
GGGCGATTTCCATACCCCCTTACAACCGAGCTTTGAAAGTGGTCGCGCTA
GGGAGGTTAGCATCTGTTCACCTCTTGGGGTATGTCGTGGGAAGGCCCTC
AACACAACGCGGTTTTTAAGCGGTTGTTGGCAATACCGCAGGTTGCATGA
CGAAAGATAACACCCCCACTGGACCGATGTTTCAAAGCTCGATTACGGTA
ATGACACAACATAGCACACCCCCTGAACCGATTTTCAAATCTCGATTTCT
CAACGGCAGAAGGAGTCACAGCGCTGAAAACGGTGGCGTTGAAGGTGACT
CGTCGAGAGCTATCCAAAAATGTATTGTTTCGTTGATGCATCCTCTTCAT
CGTGGCGTAATCAAGCTTTGAAAATTGGCTCTCAGGGGGTGTGTTATCGT
GTCTCATACACGGTACTCCGCTTCGAAAGGAGAGACGGTCCCGAAGGCTG
CACGGTGTTAGAACCGTCTCGTCGACAGCTTTCCGGGAACGTATCACGGA
AGGGGTCTCTGTTTAGTGCCGGTTGATTAGTGCCGTACAGTGCAGGTGTT
TTCGGCGGGAACACACTGAATTTCCATGTCATTGTCTGTACTGCTGTGAA
TAGTGCCGGTCCGGTATAGCGCCGGTGAATACTCTTGGCACGCACCGGCA
GTAAACAGGGACCCCCACTGCTGCAGTCTCTACACAAAGTTTGACGTAAG
ATATCATACCCCTCTGCATTTGATTTCGGCATCTTCTTGGTGGTGGCTTT
ATTCTATCAAGCTCAAGAACTCTGTCCAATGGTGGTGTGGTAGCTGTTTG
CAACCTTGGGTATTTCAGTGTATCGGGACCACTACCGTACTCGGCGTTGC
ATGCTCGACGTCCCTCTTCTTCTCTTCCCCCCTCTCTCCGCACGCTCTGT
CCTCTCGAGGACCCATGGCCAACGGTTTAACAGCTGAGGCATGCAAAACA
TACATACCCGCGTCCGGCCATGACATCCACGAGTGCTGAGCGACCGTGAC
TGATTTTGCGTAGCCCCCCCTCATCGCCGCCGCCGCTTTTGGTTGTTGCT
TTCCGTTTTTCCTCTCGCACGAAGACCATCGATCATACATTCTGATTTTT
AGTACTTCGAATTATTCATTTGCCTTCCCTGCTCCAAATATCCTCCCTGC
GCCGGGTGTAGCAAGTCTTTTTCGCTTCGTCTTTGTTTTCTCACTGGCAA
AGCGCAGCTAATCCATGTCTGTCCGTAGATGGGGATCTAGCTTCCTGTAG
CATAAGTTGGCAATGTTTTTCTTCCGAGCAAACACCAAACGAATCCATCG
CTATCCTAGATGAAGGTCTATCAACATGTAGGATAAGTTAGTGATGTTTT
CTTGAAACATGACACAAAACAAATCCATCTCTATCCTAGATGAGGGTCTA
TCTACATGTAGGAAAGTTACGTAGTGATGATTCCGTGAAACATGATGCCA
AACGAATCCATCTCTTTCTGGATTATCTGCATGTAGGATAAGCTAGCGAT
CTTTTCTTGAAACATGGCACAAAACGAATCCATCTCTTTCCTAGATGAGG
GTCTATCTACATGCACGAAGCTAGCAATGAATTTCAGCGTTGGCGGAGCT
TGTGGTTTTTACGATTTTCCACTCAGAGCATGCAGAGATATCTCCCCTGT
AGGCAGCGGTCCCGCCCAATGTTCTTTTGTTGTGTACTCCTTTTATACGG
TCCTGCCCAATGTTTTTTGTTGTGCACATATTTTCTTGTTTAACGGTCCC
CGCCCAACGGTTTCTCTAGTTTAATGATCCCGCCCAATGCTTTTTGTTGT
GTCTTTTATTTTGTTTTTCAGGCGGCCGAATCGGAGCAAGGAATGACATC
GAAACCTCCAAAGACGGCGGGATGCGGTTGCTCGGTATCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1744:9389..13131-

>mRNA_Ecto-sp13_S_contig1744.5226.1 ID=mRNA_Ecto-sp13_S_contig1744.5226.1|Name=mRNA_Ecto-sp13_S_contig1744.5226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1744:9389..13131- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGGGAGGGGGTTGGATGGGGAGCAGCAGGCGGGCGGGGACGGTGG
TCGTGTCCCTGACGGCGGTGGGTCGGGCGGGGGAGGGGCGGTGGACAGCT
TGCCCCGGTCATCAGATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TACCTGCAACGGAAATGTAGTAGCGGCAGTTCCCGCGGCACAAGTAGCCG
AGAAGGTGGAGGGTCTGGCGCCGGGGTTCCGAAACGGCGGGAGGAGCAAC
GCGACGATTGTTGTGAAAGCGGCGGAAGCACGGCGGCCGGCATCATCAGC
AAGAGCCACGTTCTGGCGGAACAGCAGCAGCAGCAGCAGCAGCAGCAACA
GCAGCAGCAGCAACAGCAGCAACGGCGAGGACGAGGACGACAACAAGGAG
AGCCCCGACGACAACAACAGCCGATGGTCGGGCCGGCAACGTCCACCGGT
TTCGGAGACACGGCCGCCGCCGCCGCAGATTTCGACCCGCTGCCACCAGC
AAGGGCAGCAACGGCAGCCCGAGGGATTCAAAACGCACGAGGGGCGAACG
GCCAGCAAGCCTTTAGCGAGGGTACCGAAGAAACGCTCGGAGGTTCCTCC
GAGGGGCGGCGGAATTCGGACGGGAGTGCCGGTTCGGGGGGGGCGTGTGT
CGCGAAAGCGGCGATTGTGGAGGGGGGGGGGTCTGGGAGACCCGGCGCCG
TTGCCGCGAAGCCACCAGGGCGCCAGCGGGCGGGGGACAGGCGAGCCGCC
AGGCTCGGAAACAACGCGGCCGAATCGGAGCAAGGAATGACATCGAAACC
TCCAAAGACGGCGGGATGCGGTTGCTCGGTATCATGA
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