mRNA_Ecto-sp13_S_contig17426.5218.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17426.5218.1
Unique NamemRNA_Ecto-sp13_S_contig17426.5218.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17426.5218.1 vs. uniprot
Match: A0A6H5JE47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE47_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.050e-38
Identity = 103/119 (86.55%), Postives = 103/119 (86.55%), Query Frame = -2 
Query:   33 NGRKGVESPVLRPVASGQGRVVRAAPAVALVAPTAEGAPTNRVTPPPSSDDLARGTGRPVSRANEAAARTRRPLGSSPAAAWAATXXXXXXXXXXXXXXXXXXXXXXCPMRAASAGGGP 389
            NGRK VES VL PVASGQGRVVRAAPAVA VAP AEGAPT RVTPPPSSDDLARGT RPVSRANEAA RTR PLGSSPAAAWAAT       XXXXXXXXXXXXXXXCPMRAASAGGGP
Sbjct:  691 NGRKSVESAVLCPVASGQGRVVRAAPAVASVAPAAEGAPTKRVTPPPSSDDLARGTCRPVSRANEAATRTRWPLGSSPAAAWAATPAVGVVAXXXXXXXXXXXXXXXCPMRAASAGGGP 809
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17426.5218.1 vs. uniprot
Match: D7FWE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE9_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.500e-35
Identity = 89/115 (77.39%), Postives = 91/115 (79.13%), Query Frame = -2 
Query:   45 NGRKGVESPVLRPVASGQGRVVRAAPAVALVAPTAEGAPTNRVTPPPSSDDLARGTGRPVSRANEAAARTRRPLGSSPAAAWAATXXXXXXXXXXXXXXXXXXXXXXCPMRAASA 389
            NGR+GVES +LRPVASGQGRVVRAAPAVALVAP AEGAPT RVTPPPS DDLARGTGRPVSR NEA A TRRP GSSP A WAAT             XXXXXXXX CPMRAASA
Sbjct:  606 NGREGVESAILRPVASGQGRVVRAAPAVALVAPAAEGAPTKRVTPPPSGDDLARGTGRPVSRVNEAVAGTRRPPGSSPTAEWAATPAVGVVAAPGGLLXXXXXXXXPCPMRAASA 720
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17426.5218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE47_9PHAE3.050e-3886.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWE9_ECTSI1.500e-3577.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17426contigEcto-sp13_S_contig17426:1154..1544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size392
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.7176309-CDS-Ecto-sp13_S_contig17426:1153..15431681462908.7176309-CDS-Ecto-sp13_S_contig17426:1153..1543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17426 1154..1543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17426.5218.1prot_Ecto-sp13_S_contig17426.5218.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17426 1154..1543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17426.5218.1

>prot_Ecto-sp13_S_contig17426.5218.1 ID=prot_Ecto-sp13_S_contig17426.5218.1|Name=mRNA_Ecto-sp13_S_contig17426.5218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
LGASTIPTACSGPPPALAARIGHGAATIPTAGNNAPGAATTPTAGVAAHA
AAGLDPRGRRVLAAASLALDTGRPVPLAKSSLLGGGVTLFVGAPSAVGAT
NATAGAALTTRPWPLATGRRTGDSTPFLPF
back to top

mRNA from alignment at Ecto-sp13_S_contig17426:1154..1544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17426.5218.1 ID=mRNA_Ecto-sp13_S_contig17426.5218.1|Name=mRNA_Ecto-sp13_S_contig17426.5218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=391bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17426:1154..1544+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGGTGCCTCTACAATACCCACTGCCTGCAGTGGACCGCCGCCCGCGCT
CGCCGCCCGCATCGGACACGGTGCCGCCACTATTCCCACTGCTGGCAATA
ACGCCCCTGGTGCCGCCACGACGCCGACGGCAGGGGTCGCCGCCCACGCC
GCCGCGGGGCTCGACCCCAGAGGCCGTCGCGTCCTCGCCGCTGCCTCGTT
GGCCCTCGACACCGGACGACCAGTACCTCTCGCCAAATCGTCACTGCTTG
GTGGCGGCGTGACCCTGTTCGTCGGCGCCCCCTCCGCCGTAGGGGCGACC
AACGCGACGGCAGGCGCCGCTCTCACGACCCGGCCTTGGCCGCTTGCGAC
AGGACGGAGGACAGGGGACTCCACGCCCTTCCTCCCGTTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17426:1154..1544+

>mRNA_Ecto-sp13_S_contig17426.5218.1 ID=mRNA_Ecto-sp13_S_contig17426.5218.1|Name=mRNA_Ecto-sp13_S_contig17426.5218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17426:1154..1544+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGGTGCCTCTACAATACCCACTGCCTGCAGTGGACCGCCGCCCGCGCT
CGCCGCCCGCATCGGACACGGTGCCGCCACTATTCCCACTGCTGGCAATA
ACGCCCCTGGTGCCGCCACGACGCCGACGGCAGGGGTCGCCGCCCACGCC
GCCGCGGGGCTCGACCCCAGAGGCCGTCGCGTCCTCGCCGCTGCCTCGTT
GGCCCTCGACACCGGACGACCAGTACCTCTCGCCAAATCGTCACTGCTTG
GTGGCGGCGTGACCCTGTTCGTCGGCGCCCCCTCCGCCGTAGGGGCGACC
AACGCGACGGCAGGCGCCGCTCTCACGACCCGGCCTTGGCCGCTTGCGAC
AGGACGGAGGACAGGGGACTCCACGCCCTTCCTCCCGTTC
back to top