mRNA_Ecto-sp13_S_contig1742.5217.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1742.5217.1
Unique NamemRNA_Ecto-sp13_S_contig1742.5217.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1742.5217.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.830e-14
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:  253 PANRTHAMFRHQGESVGTALHAIDRVQTISAAKSQRPG 366
            PANRTHAM+RHQ ESVGTALHAIDRVQTISAAKSQRPG
Sbjct:  216 PANRTHAMYRHQAESVGTALHAIDRVQTISAAKSQRPG 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1742.5217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ53_9PHAE5.830e-1494.74Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1742contigEcto-sp13_S_contig1742:10718..11084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size368
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.6279461-CDS-Ecto-sp13_S_contig1742:10717..110831681462908.6279461-CDS-Ecto-sp13_S_contig1742:10717..11083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1742 10718..11083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1742.5217.1prot_Ecto-sp13_S_contig1742.5217.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1742 10718..11083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1742.5217.1

>prot_Ecto-sp13_S_contig1742.5217.1 ID=prot_Ecto-sp13_S_contig1742.5217.1|Name=mRNA_Ecto-sp13_S_contig1742.5217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
SGSGAASTSSGGSSAVVGDSGNGTRFVRGKGDGHGGNSRTAKSSSKSGRT
RGGGGGAGAGFGSDDDDDDDDDDGEGGAFAAASAPANRTHAMFRHQGESV
GTALHAIDRVQTISAAKSQRPG
back to top

mRNA from alignment at Ecto-sp13_S_contig1742:10718..11084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1742.5217.1 ID=mRNA_Ecto-sp13_S_contig1742.5217.1|Name=mRNA_Ecto-sp13_S_contig1742.5217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:10718..11084+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGAGCGGGGCGGCGAGCACGAGCAGCGGCGGGTCGAGCGCCGTCGT
GGGCGACAGCGGCAACGGCACCCGCTTCGTACGCGGCAAGGGCGATGGTC
ACGGGGGCAACAGCCGGACGGCGAAGAGCAGCAGCAAAAGCGGGCGTACT
CGCGGCGGCGGCGGCGGCGCGGGCGCCGGGTTCGGTAGCGACGACGACGA
CGATGACGATGACGACGACGGCGAAGGCGGCGCCTTTGCGGCAGCGTCGG
CCCCGGCGAACCGGACGCACGCCATGTTCCGGCACCAGGGCGAGAGCGTT
GGCACCGCGCTGCACGCGATCGATCGTGTCCAGACCATCTCGGCGGCCAA
GAGCCAGCGGCCCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1742:10718..11084+

>mRNA_Ecto-sp13_S_contig1742.5217.1 ID=mRNA_Ecto-sp13_S_contig1742.5217.1|Name=mRNA_Ecto-sp13_S_contig1742.5217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:10718..11084+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGAGCGGGGCGGCGAGCACGAGCAGCGGCGGGTCGAGCGCCGTCGT
GGGCGACAGCGGCAACGGCACCCGCTTCGTACGCGGCAAGGGCGATGGTC
ACGGGGGCAACAGCCGGACGGCGAAGAGCAGCAGCAAAAGCGGGCGTACT
CGCGGCGGCGGCGGCGGCGCGGGCGCCGGGTTCGGTAGCGACGACGACGA
CGATGACGATGACGACGACGGCGAAGGCGGCGCCTTTGCGGCAGCGTCGG
CCCCGGCGAACCGGACGCACGCCATGTTCCGGCACCAGGGCGAGAGCGTT
GGCACCGCGCTGCACGCGATCGATCGTGTCCAGACCATCTCGGCGGCCAA
GAGCCAGCGGCCCGGG
back to top