mRNA_Ecto-sp13_S_contig1742.5216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1742.5216.1
Unique NamemRNA_Ecto-sp13_S_contig1742.5216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1742.5216.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.980e-37
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:  394 MSDKPGGAFSGLRPTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGAGGAISSRRIAGSRSADRDGMVG 642
            MSDKPGGAFSGLR TSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLG GGAISSRRIAGSRSADRDGMVG
Sbjct:    1 MSDKPGGAFSGLRSTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLGVGGAISSRRIAGSRSADRDGMVG 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1742.5216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ53_9PHAE1.980e-3797.59Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1742contigEcto-sp13_S_contig1742:5022..10696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score156.0
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D7FTQ3
Model size753
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Cds size480
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.5147252-UTR-Ecto-sp13_S_contig1742:5021..52941681462908.5147252-UTR-Ecto-sp13_S_contig1742:5021..5294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1742 5022..5294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.5263076-CDS-Ecto-sp13_S_contig1742:5294..53201681462908.5263076-CDS-Ecto-sp13_S_contig1742:5294..5320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1742 5295..5320 +
1681462908.5439007-CDS-Ecto-sp13_S_contig1742:10242..106961681462908.5439007-CDS-Ecto-sp13_S_contig1742:10242..10696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1742 10243..10696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1742.5216.1prot_Ecto-sp13_S_contig1742.5216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1742 5295..10696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1742.5216.1

>prot_Ecto-sp13_S_contig1742.5216.1 ID=prot_Ecto-sp13_S_contig1742.5216.1|Name=mRNA_Ecto-sp13_S_contig1742.5216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MGRSRGRSGHLPAPVASVLQSPKDTPLEFFQDGSRPLSARMSDKPGGAFS
GLRPTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSGGFGRSESSLG
AGGAISSRRIAGSRSADRDGMVGGGGSRGRSGRGEDNFRRAGLGGGAGRK
SRSRSGSSRG
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mRNA from alignment at Ecto-sp13_S_contig1742:5022..10696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1742.5216.1 ID=mRNA_Ecto-sp13_S_contig1742.5216.1|Name=mRNA_Ecto-sp13_S_contig1742.5216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:5022..10696+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGCTCGTTTGTCTCACACACCCGACGTGAGTTGGAGGAGACTTCGCA
CATACAAGCCCGGAAGACGAGGGAAGGGGTGGTCTGGGCGATATTTGCAA
AACCATCTGCTGCCCGGTGGAAAGGAAGCGAGCCCGAGGACCGACACACG
GCAGCATTGAGTGCGCCTTCTCCCAGGGGGGAGATTTAGGGTTCTGCTCT
CTTTCGGCGATCCAAGCGGGAGGGGTTCGGAAGCGCGGGGGCGGGGGGGC
GCCCTTGCCGCAAGCTCTGCGACATGGGTCGCAGTCGCGGTCGCAGCGGG
TGAGATGGAAAAAAAGTGGAGTCCAACGGTGTTATTTTGGTGCGCCAACT
AACGTCGGGTTTCGGTGGGCCCGCACCACAACGTGCACCAGGAATCTTTT
CATCTTTGTGTGTTCTTGCTCACGTTGTGTGTTCCGTTTTTCTACTCCGG
ACCTTCGTCGATACATGCAGCAGCCGGTTGACCCCCTCCGTTGACTGCTC
GAAATACTGGAAATAAGAGGATGCGGCGTGGGTCGCGACCCACCAAGTGC
TTCCTTATCCTGCAGCCTTTGAAAGTTTGGTTGGCTGAGTTTGGTCGCGC
AACGAACAAGTCACCCCTCTCACACTGGGCACTGTTGTACGTAGTCGTCG
GCGCTTTTCCTACCGCCGGCCTGATGGCTGTACGCACGTTCATGTGTTTT
AGGGCTTTTGGGCCATCACGGCTATCGCAACGCCAGAAGTAGATTGCTCG
GGGGCGGCACCTCTAGAGTGCGCACCACCACGCGGGTAAGCGATCATCGC
GCCCCTCGCGGTGAAGGAAGGCGGGCTCACGACAGAGCGAAAAAAGTCTT
GCCACCGATGACGAGGCTTTTGTCTTCGTCTGTGCAACTGCCGGGCTTTT
GGTCGTTGTGTGTGTGGGTCATGAGATTTTACAGCCTACAGCATTACAAA
GATGAACCGAACGGATAAGATGAAATACATTTTCTTTCCCCTCTTCTACT
AAGTATTTTTGATGGAAAAGCCACGCCTTGACTTTTTTGTGAAAGGGTTC
TCGCTTATTTGTGCGTGAGACGGGGTACAAAACAATTCTGGGTCGCGTTG
ATGGTATCTGCGTTTCCTCTCTCTAGTGTGTAGGTTCGTGTTTCCTCTCT
CATGTTTAGGTTCTTAACATGCATATGCCTAATCTATCTTCCTTCGACAA
GCGGTAGTAAATAACTTCCTTTGCTCTTGATACCATCTTTGGTATAATTT
GGGCGGAACTATTTAGTAAAACTGGTTGATATCTGTCCTACTATTTGCCG
CACCAGCCGCCTTGCATCGCATTTCAAAGACAAGCTGGCATCGTGCCTTA
TCCTACCTGGACAAGATCGGTAAGCTCGTGTCGCACAGATCGAAAAAATC
GAAGGAACGAAGGCCTTTGCACGCACATCCAACTCCGCACGCTCCGATAG
AACCTAAATTGAAGTATAGTTGTTCCCACGTCCCTAACCCCAATAGGTCT
CGACAAGTTGTTCTCTCTTGCCCTGTCTGGAAATAGCGATAAAAGGAGCC
GCGCAGCCCCACACATAGGCGAGTTCTTTGGCGTCCATCTTCCCCTTCGT
TGGTTGGAATGGCGCACGGTTGGTTTCCCGGTGGCCCTTTGGCCAGGCAT
CCGCTACGTGGCGGTTTCGTTTTCTTCTCTTCTCCCTCTGCTACCCACTG
ACTGTTGGATTTGAACCTGACTCCCCAGGTTTTGGTTCTCTCTCTTTATC
CGGGTGCAATTGTTCTCTATTCCTGGCTCCGCTCTCTGCTCTATTGTGGT
GGTCTCCCTAGAGTCTTTGATTTTCGAAAAGACAACCACCGCACGCCGGA
ATTTTTCCACGCAGCAGCTGTAAGAAGTGAGTTTGCGCCGTACACGCAAA
TTCTGACCATAACAAACACATACCAAAAATGCAGGTGTGCGCCGCTCAGT
CTGGGATTGGCATGGTCCTTCTACAATATTCAGAGCACCGAACAAAGTGC
ATACTGCGAAGTATAACATCGATCAGGGGTTGGGGTCGGGCGACGAAAGT
TCGAGGTTGGGTTGTTTTTTTGTTAATCACGATGCAGGGAGTTGGGGGGG
GGGGCGGGGGTTGCACCCAGATGCGTCGTCATGAATGCGTTCCCATGAAT
GTCTGGTGGTGTCTCAAAACCTCGAGAAACTGCTGCTGCCGTCGGTCCGC
ACGCACGGCGGTATCTCCTACTTGTATGGTACATTTGTTTGTGGGTGCTC
GCGAACAACGGCAAAGTGGGTTGTAATGTCAACCTCGTTTCTCTACTACA
GTATTGCTGCTGAAAGTGTTTTTTGTCATTCAATGGGGCACGTTTTGTTA
CCGAAACCTCGCCCATGTCAACCTCGTTTCTCTACTACAGTATTGCTTCT
GCAAGTGTTTTGTGTCATGCAATGGGGCACGTTTTGTTGTTACCGAAACC
TCGCCCTTTGTGCAGCCCGAGACATGTTTTTGCTTGCGGGGGCTGCTTTT
CCTGCTTGCGGGGGCTGCTGCTCCTTCTGAACCGTACGCAAGTCAGCTTG
CGCTCACAACAATGTGGTATAGCGTAGAAGGTAGAGGCAACGATATCGGG
CAGGAAGGTCCACGCGTCACTCCTTAATACCACTTTTTACTTCTGTCCCC
CCTAAATGCTTAACCGAAGTTGTCGTTGCTCTACGCTTGTCCCAGGCCTC
ACCCCTTGCCCTTGAGCAGTGGCCAAACCGTCACTCCCCGTGCTAAATAT
AGTTGTATTTTATTGCTGTCTTTTTCATGTTTCGTGGATGAGTTGTCGGC
AAGACCAGAGTCACACGAGTGTACCGTCACGACAGCTGTAACGATGAGGT
GTCTATTCTGTTTCTGTCTTGGGCGGTTCCCCTCTGTGTTGTCCATCTGC
ACTCGTATCCTTGAGGCTTTCTCCTCTCTCTCGCCCTCTCTCTTTCTCTT
TCGATCGATCGATCGATCGATGCTGTTTATCGTCCTCGCTCCTATACAAC
AGAACCAGAGGTTTAACCAGCGCTCGTCCTGTTTTGCATGTCGAAGTTGA
GACGGGTAGAGGGATGGTGGGGGCGGGGGGTGTTCCATTTTGGCGGAATC
AGCACGGAGCCCCCAAGAACGAAAATCGAAGTTCACAAAACAAGTTGTAG
CTGTAAGTGATCTCCGAAATACCTCTCTCTTGGCTGCCGCAGACCATCGC
TCTCTTGCTTGTTTGGGACAAACCAGCAAGTGAACTCGCAACAATTTGTG
TCTCACTTCCGATCCTCCATACTGCTGCCTCTGATTGTTCAATCGGTGTT
AGTTCCCCCGCTCCTCACAAATCTTAAATTTCAACGCCTTCGTCTCTGCA
TTCTTGTGCGTTCACGAGTTGATGCTCGGATTTGCACTGCTACACGCCAC
CTTACTTGGGGAGTGAGAGGACCTTCCACAGCGGGGCCACTTGAACGTAG
CAGATCTTTGCCGTTGGGGATTTTATGCGGTGCGAATATCATTCCTCCTA
TGTCTTGCTCCGTCGTGGTGCACGTGTATAATTAATAGTGAGGCCCCGTT
TTCTTTCGCCGCACATACCTTTGCTGTGGATTGTATGCATTTAACTAGTA
GTCACTTATGGACAATCTCGCCTCCTTGTTCAACCGGCCGATTGCCCACG
CACAACTGTGGTGTAACGCCGCTTACTGGTGTAGACGAAAGCGAGAGAGG
AGAGCGCACCAGCACGCTGTTAGCACAGCAGTTCCACAGCCGGTTCAGAA
AAGCATGCGTGAACGTCACAGAAAGACCGCCCGTGTGAGATTTTTTTTTC
GCCAAGCGTTTCCCTACAAATACGGAAAGACTGTCGGTCCAACTTCTCCC
CAAGGGTGCCCTTCAATACATAGTATGCATATATTCCCGCACAACCAGAT
ATCCCACATACACCCGCCTCTTGAGACGAACACTCGCACCATACATTAGT
AACATCAAGTTGACAGCTGAAACTAGGGACCAACCGTTCATTCGACATGT
ATGTCCGCTTTTTTTTCCTCTCGGGGTATTTTATGTTTCGCCGCATTTTC
GTGTTCACGCCCTATTTTTGTACGCACAGTGTTGTTGTATGCATTGCTAC
GGGCCATGGCCGCAAGATATTCCTGTCCCAACAACGGCCGTGTGGTGGTG
TTGAGTAGCGGACCTGCCGGGTCGTGACACACCGGCAGTGCCTGCTGTAG
TACGAGGCACCTTAGGACGAGTTGTGCTGTATTTTTTCGGCACGGCACCT
GACGGCAGTTCGTTGGTTCCGGGCGTGTGTTCTATGGATAGAGATGGATT
CGTTTTGTCGAGGGTAAGGAAAAAAAAAGAAGCGATAAGTGCATGCGCTT
GGGCGGGCGTACGTTAGAGTAGCTCCAGACGATTGAACAAAGGAGACCTG
GTGTTTATAGGGCGAGGACTAAGTGGAACGACAGTGGTGGCTCGTAGGGA
CGAAATTGCTCAGAAGTTTCAGCGAGGAGAACTGGACAAGCAGGGGCAGT
GGCGTTCGCAGCGGCAGCAGCAGAGAGGTAGTCTATACTTTTCGGCGGCG
GCTGCTCTGCTGCTGCTCCCGTCAGGCGACAAGATTTAGGTGTGACAGAT
TGCACGTTGCAGTCCTGTTTCGGGCGAGAAGCACGAGGGCCCAGGAGATA
GCTGTAGTTTACCCGCGGTTGGTATGCTCAACATGGGGATCTACAACACG
CAATATAAATCCCGAGCCGCGGGCGAACATCCACCAATTGATTGATCCGA
GTACTGGATATCCGAACCGGCATCGTGGGGTTTCGCACCCGCAACGGGTT
GTCGCACCCACCCCAGCACGCAAGCAAGGAAAGCCGTGATTTGACAAAAA
GCGATCGCACCCCGCCGTAGCCCTAGTAGCACTTACGACAGCGGTTTTCA
ATATGCGTCACTGCGGGCGGGTGCACGTGCCTTTGTTGTTTCTTCATGTT
CGTATCATCACAGAGGGACTACCAATTTGAGATGAGTTCTCAAGAGGGTA
TTATTTATACATGAGTGAGGATACGACCACAAGCACGTCCCCTTTTCCCG
CCCTCTATTCCCATGTTTGAGCAGTCAGTGGAGTTGGGTACTCGCACGTG
CCCGTCCCTTTTTTTTAGTCGTACTAAACCAAACGCCCCCCCCCCGGCCG
CCGTCTTCACCCGATTTTCGTGGACTCGTTGTTCACACACGGGAAAAAAA
CACATGAATGAACAAATGAAGGCACCTGCCGGCACCTGTGGCATCAGTAC
TGCAGTCCCCGAAGGACACCCCGCTGGAGTTCTTCCAGGACGGGAGCCGG
CCGCTGTCGGCGCGCATGAGCGATAAGCCCGGGGGCGCCTTCTCGGGACT
ACGCCCGACTTCCTTCTCGATCGCCAGGGGACCCGCGCGCTCCCGCGTGT
CCTCCATCGAGGAGGAGGACAGGCGGGCGGGGAACCAGCCGCTCGTGTCG
CAGTCGTACTCCGGCGGGTTCGGGAGGTCGGAGAGCTCGCTCGGGGCCGG
CGGCGCGATATCCTCGCGCAGGATAGCCGGCAGCCGGTCGGCGGACCGCG
ACGGTATGGTCGGCGGAGGCGGCAGCCGCGGTCGCAGCGGCAGGGGGGAG
GACAACTTCCGGCGCGCCGGCTTGGGCGGCGGCGCCGGCCGCAAGAGCAG
GAGCCGCAGCGGCAGCAGTAGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1742:5022..10696+

>mRNA_Ecto-sp13_S_contig1742.5216.1 ID=mRNA_Ecto-sp13_S_contig1742.5216.1|Name=mRNA_Ecto-sp13_S_contig1742.5216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:5022..10696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTCGCAGTCGCGGTCGCAGCGGGCACCTGCCGGCACCTGTGGCATC
AGTACTGCAGTCCCCGAAGGACACCCCGCTGGAGTTCTTCCAGGACGGGA
GCCGGCCGCTGTCGGCGCGCATGAGCGATAAGCCCGGGGGCGCCTTCTCG
GGACTACGCCCGACTTCCTTCTCGATCGCCAGGGGACCCGCGCGCTCCCG
CGTGTCCTCCATCGAGGAGGAGGACAGGCGGGCGGGGAACCAGCCGCTCG
TGTCGCAGTCGTACTCCGGCGGGTTCGGGAGGTCGGAGAGCTCGCTCGGG
GCCGGCGGCGCGATATCCTCGCGCAGGATAGCCGGCAGCCGGTCGGCGGA
CCGCGACGGTATGGTCGGCGGAGGCGGCAGCCGCGGTCGCAGCGGCAGGG
GGGAGGACAACTTCCGGCGCGCCGGCTTGGGCGGCGGCGCCGGCCGCAAG
AGCAGGAGCCGCAGCGGCAGCAGTAGGGGC
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