mRNA_Ecto-sp13_S_contig17405.5211.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17405.5211.1
Unique NamemRNA_Ecto-sp13_S_contig17405.5211.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17405.5211.1 vs. uniprot
Match: D8LII6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII6_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.710e-75
Identity = 133/147 (90.48%), Postives = 137/147 (93.20%), Query Frame = 1 
Query:    1 EAVVGITNEGGATGPLGVPAAQAFRRIGEVVGVAAGLEQLGDALLWRCSSLLAKPNRLDPKQLLSLTHSLAGLPEAFYPKVEGFLASLVAKIFLSRSNACRGGHVKSVVRRTAGLAATSQVGALYLQSSLLLHEHLWEKSTADIISE 441
            EA VG+TNEGGATG LGVP AQAFRRIGEVVGVAAGL+QLG+AL+ RCSSLLAKPNRLDPKQLLSLTHSLAGLP AFYPKVEGFLASLVAKIFLSRSNACR GHVKS VRRTAG AAT QVGALYLQSSLLLHEHLWEKSTADII E
Sbjct:  955 EAGVGMTNEGGATGALGVPVAQAFRRIGEVVGVAAGLDQLGEALVRRCSSLLAKPNRLDPKQLLSLTHSLAGLPAAFYPKVEGFLASLVAKIFLSRSNACRSGHVKSTVRRTAGFAATWQVGALYLQSSLLLHEHLWEKSTADIIGE 1101
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BLAST of mRNA_Ecto-sp13_S_contig17405.5211.1 vs. uniprot
Match: A0A6H5K6S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S2_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 7.070e-74
Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 1 
Query:    1 EAVVGITNEGGATGPLGVPAAQAFRRIGEVVGVAAGLEQLGDALLWRCSSLLAKPNRLDPKQLLSLTHSLAGLPEAFYPKVEGFLASLVAKIFLSRSNACRGGHVKSVVRRTAGLAATSQVGALYLQSSLLLHEHLWEKSTADIISE 441
            EA VG+TNEGG +GPLGV  AQAFRRIGEVVGVAA LE LGDALL RCSSLLAKPNRLDPKQLLSLTHSLAGLP AF+PKV+GFLASLVAKIFLSRSNACRGGH KS VRRTAGLAATSQVGALYLQSSLLLHEHLWEKSTA IISE
Sbjct: 1016 EAGVGMTNEGGPSGPLGVSVAQAFRRIGEVVGVAARLELLGDALLRRCSSLLAKPNRLDPKQLLSLTHSLAGLPAAFFPKVKGFLASLVAKIFLSRSNACRGGHAKSAVRRTAGLAATSQVGALYLQSSLLLHEHLWEKSTAGIISE 1162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17405.5211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LII6_ECTSI1.710e-7590.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6S2_9PHAE7.070e-7489.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17405contigEcto-sp13_S_contig17405:2760..3646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.2668505-CDS-Ecto-sp13_S_contig17405:2759..29291681462908.2668505-CDS-Ecto-sp13_S_contig17405:2759..2929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 2760..2929 +
1681462908.2786005-CDS-Ecto-sp13_S_contig17405:3373..36441681462908.2786005-CDS-Ecto-sp13_S_contig17405:3373..3644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 3374..3644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17405.5211.1prot_Ecto-sp13_S_contig17405.5211.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17405 2760..3644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17405.5211.1

>prot_Ecto-sp13_S_contig17405.5211.1 ID=prot_Ecto-sp13_S_contig17405.5211.1|Name=mRNA_Ecto-sp13_S_contig17405.5211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
EAVVGITNEGGATGPLGVPAAQAFRRIGEVVGVAAGLEQLGDALLWRCSS
LLAKPNRLDPKQLLSLTHSLAGLPEAFYPKVEGFLASLVAKIFLSRSNAC
RGGHVKSVVRRTAGLAATSQVGALYLQSSLLLHEHLWEKSTADIISE
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mRNA from alignment at Ecto-sp13_S_contig17405:2760..3646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17405.5211.1 ID=mRNA_Ecto-sp13_S_contig17405.5211.1|Name=mRNA_Ecto-sp13_S_contig17405.5211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=887bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17405:2760..3646+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGCTGTTGTGGGGATTACGAACGAGGGGGGGGCAACTGGCCCCCTCGG
CGTGCCTGCGGCGCAGGCGTTTCGGCGCATCGGGGAAGTGGTTGGGGTAG
CGGCGGGGTTGGAGCAGTTGGGCGACGCACTCCTTTGGCGGTGTTCTTCT
CTGCTAGCGAAGCCAAACAGGTGCGTGACCAGCATGAGCTCTCCCATTGC
TTCGGTCTTGAGCAGAAATTTCATTAATTTAGACTTTGCTAGGCGGTCGC
CGACACCCCAAAAGGTACCAAGCGCGATTGTGTGTGCATTTTCTTCTTTT
TTCTGTGCACGCCGCTCTATGTCCTTTGCTATCGTGTACCGACGACAAAA
AATGATTCGAACGGTTGAAGCGAATTTCATCGGTAGAAAACAGATCGCAT
CACCATTTGCTTTTTGAACCTTCACCCGCTTCCCGAGGGGGTTAGTGGAC
CCCTTTCCGGGCATCGCACATCATGGTTGATGCTGCGGAAAACTGATCAC
ATCCGTTAGTCCCATTTGCTCGCCTGCCCTCTAATCCTACTTTTACCCCG
ATGCGAATATCAATTGTGCTAATCACGCCAGCTTGTCTGTTCTGTGTTCT
GTTTCTTTCCACAGGCTGGACCCCAAGCAGCTTCTGTCGCTCACCCACAG
CCTCGCTGGTCTGCCTGAAGCATTTTATCCGAAAGTGGAAGGATTCTTGG
CCAGTCTCGTTGCGAAGATCTTTCTCTCAAGGTCCAACGCTTGTAGGGGT
GGTCACGTAAAGTCCGTGGTCAGGAGAACAGCCGGGCTCGCAGCGACGTC
GCAAGTAGGGGCGCTCTATCTGCAATCTTCCCTCTTGCTGCATGAGCATT
TGTGGGAGAAGAGCACCGCAGACATTATTAGTGAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17405:2760..3646+

>mRNA_Ecto-sp13_S_contig17405.5211.1 ID=mRNA_Ecto-sp13_S_contig17405.5211.1|Name=mRNA_Ecto-sp13_S_contig17405.5211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17405:2760..3646+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGCTGTTGTGGGGATTACGAACGAGGGGGGGGCAACTGGCCCCCTCGG
CGTGCCTGCGGCGCAGGCGTTTCGGCGCATCGGGGAAGTGGTTGGGGTAG
CGGCGGGGTTGGAGCAGTTGGGCGACGCACTCCTTTGGCGGTGTTCTTCT
CTGCTAGCGAAGCCAAACAGGCTGGACCCCAAGCAGCTTCTGTCGCTCAC
CCACAGCCTCGCTGGTCTGCCTGAAGCATTTTATCCGAAAGTGGAAGGAT
TCTTGGCCAGTCTCGTTGCGAAGATCTTTCTCTCAAGGTCCAACGCTTGT
AGGGGTGGTCACGTAAAGTCCGTGGTCAGGAGAACAGCCGGGCTCGCAGC
GACGTCGCAAGTAGGGGCGCTCTATCTGCAATCTTCCCTCTTGCTGCATG
AGCATTTGTGGGAGAAGAGCACCGCAGACATTATTAGTGAA
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