mRNA_Ecto-sp13_S_contig10032.52.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10032.52.1
Unique NamemRNA_Ecto-sp13_S_contig10032.52.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10032.52.1 vs. uniprot
Match: D7FH40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH40_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 6.430e-12
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 MDVAGSCAMDARVRWRQLGANSPFACAPAVTQG 99
            MDVAGSCAMDAR RW QLGA S  ACAPAVTQG
Sbjct:    1 MDVAGSCAMDARARWSQLGATSHSACAPAVTQG 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10032.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH40_ECTSI6.430e-1284.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10032contigEcto-sp13_S_contig10032:3104..3586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size102
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_000700.1
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462501.8331027-CDS-Ecto-sp13_S_contig10032:3103..31501681462501.8331027-CDS-Ecto-sp13_S_contig10032:3103..3150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10032 3104..3150 +
1681462501.8412127-CDS-Ecto-sp13_S_contig10032:3531..35861681462501.8412127-CDS-Ecto-sp13_S_contig10032:3531..3586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10032 3532..3586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10032.52.1prot_Ecto-sp13_S_contig10032.52.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10032 3104..3586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10032.52.1

>prot_Ecto-sp13_S_contig10032.52.1 ID=prot_Ecto-sp13_S_contig10032.52.1|Name=mRNA_Ecto-sp13_S_contig10032.52.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MDVAGSCAMDARVRWRQLGANSPFACAPAVTQG*
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mRNA from alignment at Ecto-sp13_S_contig10032:3104..3586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10032.52.1 ID=mRNA_Ecto-sp13_S_contig10032.52.1|Name=mRNA_Ecto-sp13_S_contig10032.52.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10032:3104..3586+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGTGGCGGGGTCATGTGCGATGGATGCTCGAGTAAGATGGAGGTG
AGACGCTACGAACGACGGTATTTGATTTCGCTCCTGTACTACGAGCGCAT
GGCATGACATGAGACGACATGACATGACATGACATGACATGACATGACAT
GACATGACATGGACTGATGACGTCCCGGCGAGGTAGATGTCGTAAGAGGA
AATGACGTTGCGCCAAAGCACTGTTCACGGTCACAAGGTTGGGTGTTTGC
TACCCCAACTTCCTCTGCCACCGTTGACTGGCTGTCATCACCGAACCCTG
TCGTGAAAAGAACGAACCGCGCATCACCTGGGGGAGGCAAGGCTTGCACC
GTTTGCGTCCCACCGCACCAAGCATGCTTTGCCCCTGTGCCTGTGGCCCG
AAATACATCACCGTTATCGCAACGACAGGCAACTCGGGGCAAACAGCCCC
TTCGCGTGTGCCCCGGCTGTAACGCAAGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10032:3104..3586+

>mRNA_Ecto-sp13_S_contig10032.52.1 ID=mRNA_Ecto-sp13_S_contig10032.52.1|Name=mRNA_Ecto-sp13_S_contig10032.52.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10032:3104..3586+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGTGGCGGGGTCATGTGCGATGGATGCTCGAGTAAGATGGAGGCA
ACTCGGGGCAAACAGCCCCTTCGCGTGTGCCCCGGCTGTAACGCAAGGTT
GA
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