mRNA_Ecto-sp13_S_contig17317.5168.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17317.5168.1
Unique NamemRNA_Ecto-sp13_S_contig17317.5168.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17317.5168.1 vs. uniprot
Match: D7G9I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I6_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 6.580e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGILQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKR 270
            MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGILQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKR
Sbjct:  322 MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGILQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKR 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17317.5168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9I6_ECTSI6.580e-55100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17317contigEcto-sp13_S_contig17317:2..1934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462904.648323-CDS-Ecto-sp13_S_contig17317:1..731681462904.648323-CDS-Ecto-sp13_S_contig17317:1..73Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17317 2..73 +
1681462904.6580462-CDS-Ecto-sp13_S_contig17317:688..7721681462904.6580462-CDS-Ecto-sp13_S_contig17317:688..772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17317 689..772 +
1681462904.6675408-CDS-Ecto-sp13_S_contig17317:1793..19341681462904.6675408-CDS-Ecto-sp13_S_contig17317:1793..1934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17317 1794..1934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17317.5168.1prot_Ecto-sp13_S_contig17317.5168.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17317 2..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17317.5168.1

>prot_Ecto-sp13_S_contig17317.5168.1 ID=prot_Ecto-sp13_S_contig17317.5168.1|Name=mRNA_Ecto-sp13_S_contig17317.5168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGI
LQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKRCVFAFVRG*
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mRNA from alignment at Ecto-sp13_S_contig17317:2..1934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17317.5168.1 ID=mRNA_Ecto-sp13_S_contig17317.5168.1|Name=mRNA_Ecto-sp13_S_contig17317.5168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17317:2..1934+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGGGAGGTACCGCAGCGCCGTGAAGGACTGCGCCCTGGCTCTCGA
GTCGGCCGCGGACTGGGATCAGGTGTGCGCGTGCGTTTGTGCCGTCGTGC
CTTCCCTGTTTCTTGGTGTCGTAGCTACAGTAGTTGGTGTTGTAGATATT
TTTTTTGTCTGTGTTTTGCTGCTCGCTGCCTGTGGAGGTCGGCTCGTGGT
TTGTGGCAATGCCGTTGGGAAGCTATGGCGCCACTACCGTTTGTAGCTGC
TGTTCGTGTGATGCCGTACATGTTACGCTTTCTCCGTGTTCGTGAGTTTG
GCTGAGGTGTGTGTGGGACAAGCAGTCGATGGACGTGGTTCGCAGGTAAT
AGTTTTTTTGTGCGGTTCATCGCCCCGTGATTCTGGCGTTCGTGCCACAT
GACGGATAGCAAGAGAAGTGAAGCATTGCTTTTGTTGCGGTAGCTTCTCG
CTGACGCCTGTGGCGTCTGAAGGAAGGAAGGGCCATCAATCAGAAAATCA
AATACTTCAGTACCTTGAGGGCCTTGTTCTCAGTTGGTTCCTTGAGTGAT
GGTGACCCAGACCGTTGAAATCCCCTTGTCTGTGATACCCCCACGCCCCC
ACCTCATGCTTTTTTCGTGCGCACCCCGTACCCCCCACCCTGCGCCCGCT
TGCTTGGTTGCTTGGACCGACCTAACGGCGGCAATAGGCGTACCCGCGCA
TGGGCAAGGCTTTGATGCTGGCAGGAGACCTGGGTGAGGCCGACAAGGCT
TACCGACTAGGCATCCTACAGGTAAGGCATGGGGGGAGGGGGGGGGTACT
CATAGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACA
NNNNNNNNNNGTTCTCACCGGACCAGGCTCTCACATTACCAAGCGCGAAG
CACCGTGAAGTATTCGGCGAGTCGAATTAAGGGTGCGCTGCATCCTGCTA
ATGGTGTTCGGCATCTTGTGCTCACTTCCTTGCGTACGGATGACAGCTGC
GTATGACTTGATTTATTTCCTTGTGATTTCACTTCCAGAGACTGTTAAAA
GCGCTGTGTAACTGCCTCGAGGGTGCTTGACCAATTTAACACAACGTGGT
GCGATCATCTGCTTTGCGCGTATTGAGGGTTATCGACCCGCACAACATAA
TCTACTCGACCACCATGCCACGGTTGCCGCAAAAAGAAAAAGGCGAAGGC
CAAAAAAAATCGGAAACCTGGTTGTCGAGCTCACAGAGTGATGGGCTTGT
TTTACAACATCGCTGCCAGCGACGAGGGGGAGAGGGGGGGGCTTTGTGTT
TTTCTTGTGGTCAGCATGCATCGGGTTGTTTTTTTCCCCATTCTTACTGC
CGTACCTCTGTCACAGCAGGTCTCCTTTTTGTTTTGAATGCGTATCATAT
CAGATCACCGTATGATCGGCGCGGCTTTCCGCATCCCCCTGTGTGTGTCA
CGTGTGCGGGTCTGTCCTTGCTGTTGTGCTGTCGGACTGGAGTTGTTGCT
GCTGTTGTTATCGTCGCAGCCGTTGTCATCCTTGTGTTGCTGTGGCTATG
CAAATGTTGCTCCTGCCCTCGTGCTGCAATAGTGGCCGGGCGTGTTTTTG
GCGCCCTTATTTTTTGTTTTTTCGTTTTTTGGTCAACGCCAACTGCTTGC
TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTCGCTT
GCTCGCTTGCTCGCTTGCTCGCTTGCTCTATTGCTCTATTGCTTGGTTTC
TTGCTCGCTTTTGCTCGGCATGCCTGGTTGTTGGGTCGAAAGAAGACTCC
GTTCACCGAAGACGACGTGCGGCGCAACAAGGAGTGCAACCTGGGCATCG
CCAATGTGCACGCCGTCAGGGTCCACGTCGAGAATGGAAAGGTTGCCCTC
AAGAGGTGTGTGTTTGCTTTCGTGCGAGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17317:2..1934+

>mRNA_Ecto-sp13_S_contig17317.5168.1 ID=mRNA_Ecto-sp13_S_contig17317.5168.1|Name=mRNA_Ecto-sp13_S_contig17317.5168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17317:2..1934+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGGGAGGTACCGCAGCGCCGTGAAGGACTGCGCCCTGGCTCTCGA
GTCGGCCGCGGACTGGGATCAGGCGTACCCGCGCATGGGCAAGGCTTTGA
TGCTGGCAGGAGACCTGGGTGAGGCCGACAAGGCTTACCGACTAGGCATC
CTACAGAAGACTCCGTTCACCGAAGACGACGTGCGGCGCAACAAGGAGTG
CAACCTGGGCATCGCCAATGTGCACGCCGTCAGGGTCCACGTCGAGAATG
GAAAGGTTGCCCTCAAGAGGTGTGTGTTTGCTTTCGTGCGAGGATGA
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