prot_Ecto-sp13_S_contig17317.5168.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17317.5168.1
Unique Nameprot_Ecto-sp13_S_contig17317.5168.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length99
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17317.5168.1 vs. uniprot
Match: D7G9I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I6_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 6.580e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 
Query:    1 MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGILQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKR 90
            MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGILQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKR
Sbjct:  322 MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGILQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKR 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17317.5168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9I6_ECTSI6.580e-55100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..83
e-value: 5.2E-8
score: 35.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 3..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17317contigEcto-sp13_S_contig17317:2..1934 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17317.5168.1mRNA_Ecto-sp13_S_contig17317.5168.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17317 2..1934 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17317.5168.1 ID=prot_Ecto-sp13_S_contig17317.5168.1|Name=mRNA_Ecto-sp13_S_contig17317.5168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MIGRYRSAVKDCALALESAADWDQAYPRMGKALMLAGDLGEADKAYRLGI
LQKTPFTEDDVRRNKECNLGIANVHAVRVHVENGKVALKRCVFAFVRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf