mRNA_Ecto-sp13_S_contig17299.5156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17299.5156.1
Unique NamemRNA_Ecto-sp13_S_contig17299.5156.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17299.5156.1 vs. uniprot
Match: A0A6H5JMT1_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT1_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 9.340e-98
Identity = 159/179 (88.83%), Postives = 164/179 (91.62%), Query Frame = 1 
Query:   13 KMAPRQQNQQQRRRWASVPSASLLVSFVLVVTFSPLLARATSSSFFASFCLEETQACEADEECYECLLSWPATDATTCTDFSLEGGETTCEENGIARCCGFEEGTAESCMENALLEAFWTCTLADVGCSLEDMPCSTTAVVAVSAATPSIRPLSSSMYGTPGAGLAAAVVAASAAAIGL 549
            KMAPRQ NQQQR RWASVPSASLL+S VLVVT SPLLARATSSS F+SFC+EETQACEADEECY CLLSWPATDATTCTD+SLEGGETTCEENGIA CCGFEEGTAESCMENALLEAFWTCTLADVGCSL DMPCST AVVAVS+A PSI PLSS MYG PGA LAAAVVA SAAAIGL
Sbjct:  286 KMAPRQHNQQQRWRWASVPSASLLLSLVLVVTLSPLLARATSSSSFSSFCMEETQACEADEECYACLLSWPATDATTCTDYSLEGGETTCEENGIAHCCGFEEGTAESCMENALLEAFWTCTLADVGCSLGDMPCSTVAVVAVSSAAPSIGPLSS-MYGAPGAALAAAVVAVSAAAIGL 463
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17299.5156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMT1_9PHAE9.340e-9888.83PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17299contigEcto-sp13_S_contig17299:703..3526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size552
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionExpressed protein
Ec32 orthologEc-18_000110.1
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.5334322-CDS-Ecto-sp13_S_contig17299:702..8861681462903.5334322-CDS-Ecto-sp13_S_contig17299:702..886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17299 703..886 -
1681462903.5430999-CDS-Ecto-sp13_S_contig17299:1343..14471681462903.5430999-CDS-Ecto-sp13_S_contig17299:1343..1447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17299 1344..1447 -
1681462903.5533552-CDS-Ecto-sp13_S_contig17299:2845..29321681462903.5533552-CDS-Ecto-sp13_S_contig17299:2845..2932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17299 2846..2932 -
1681462903.5634208-CDS-Ecto-sp13_S_contig17299:3349..35111681462903.5634208-CDS-Ecto-sp13_S_contig17299:3349..3511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17299 3350..3511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.5741587-UTR-Ecto-sp13_S_contig17299:3511..35261681462903.5741587-UTR-Ecto-sp13_S_contig17299:3511..3526Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17299 3512..3526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17299.5156.1prot_Ecto-sp13_S_contig17299.5156.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17299 703..3511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17299.5156.1

>prot_Ecto-sp13_S_contig17299.5156.1 ID=prot_Ecto-sp13_S_contig17299.5156.1|Name=mRNA_Ecto-sp13_S_contig17299.5156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MAPRQQNQQQRRRWASVPSASLLVSFVLVVTFSPLLARATSSSFFASFCL
EETQACEADEECYECLLSWPATDATTCTDFSLEGGETTCEENGIARCCGF
EEGTAESCMENALLEAFWTCTLADVGCSLEDMPCSTTAVVAVSAATPSIR
PLSSSMYGTPGAGLAAAVVAASAAAIGL*
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mRNA from alignment at Ecto-sp13_S_contig17299:703..3526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17299.5156.1 ID=mRNA_Ecto-sp13_S_contig17299.5156.1|Name=mRNA_Ecto-sp13_S_contig17299.5156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17299:703..3526- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCGACACCAGAAAATGGCGCCCCGACAGCAAAACCAGCAACAGCGGCG
GCGGTGGGCGTCCGTTCCCTCGGCGTCCCTCCTTGTCTCGTTCGTCCTGG
TCGTCACCTTCTCGCCCTTGCTAGCGAGGGCCACGAGCTCGTCCTTCTTC
GCCTCCTTCTGTCTGGAGGAGACTCAGGTGTGACCTTGCGGTGTTGCTGC
GATATTTTTTCTTTCTTTCGTAGCGAAAGAGACGGCGTTGTGGCGCGAAT
GAGGAAGTGCCATACCTCCAGCAGTGTTTCCTGACTGTTCACCTCAAGAT
TTGACTTCAGGGGAAACCTCCGGCAGGCCTGAAATGTTGGTTGACTCGCC
GGCAGATTAGTCACAAGCAACCGAGGGTCGCAGCGGCAGGTACGTTTTTC
TTGAACTGGACCATTTGTCGAGCGGGAGTTGCTCAGGTCCGGCAAACATG
TGTGGCTACTGCTGCTGTACCAAACGGTGGAAAAATATCTGTCAAGTTTG
AAGGACGCGTTTGAGTGATCGAAGTGACTGCTGTCATCCTGCAAGGATTG
GGTGATAGTGATCGCGTGCCATGTGTATACTTCTTGCACCACAGGCATGC
GAGGCAGACGAAGAGTGCTACGAGTGTCTCCTTAGCTGGCCGGCCACCGA
TGCGACGACGTGCACCGACTTTTCCCTTGAGGTACCGTACAGTCGTGACT
TCTGATATAGGAAGGTCGAAGTTGGTTGTCACCGACTGGACCCGCTAAAG
TATACTTGTAGTAGTTGGGTGCTGTGCCCTTGTACTCCGGTACAAGGGGG
GGGCTCCGATGTAAAAGGGTCGAAGGCCTGTGTGACACCAACCTTTCCTA
TCGGAGCTGCGGCTGTTCAATGCGTATGTAGAAGACAAAACAACGCAACA
GCAACAACAACTTCCCTTCGGTGACCTGTGCGTCCCTCCTTCCTCTTTGG
GGTAACTCTCGTACACAGGCTCCCTTCTACGTTCATTCGCCTCTGCCTTG
ACCGCTTGGCATCTTCTACTGCTACCATTCGATACAACAACACTGGTGAT
TCCCATTGATCTATCGCGGTTCGTAGTTGTGGTGACCCTCCCTCCAACAA
TTTTGACAACTTCGACACGAAGAGGGAAAACATCGGAAGTTGGGTTCTTC
AAAAGTATCAAAACCATGAAAGATATCAAAAAGCCACGTCGATCAAGTTT
TACCCATGGTGTCCTGTTCTTACTCAGCGTGCAGTCCGCCTGGCGTTTAT
TTCTTTTTTGTTGGATGTTTCACCGAAGAAGTTAAGCCATGCGAAACAAA
ACCCCGAAGTTTGCACAGAAGCATTTTCGTTTGGACGGATGCCCCGAGAA
CCCCAAAAAAATACGAAAACGACGTTCAGCCTTTCTTTTTTGCGGATACA
GAACTGTTCGGCAAGGCACCAGGGCCGCACGTAGGATTTTCCCCAGGAAT
TCCAAGGCATTGGATCAGTGGCGTTCCGTGCGGCGCCTGCTATAATCGGG
AAGTTCAATGCAGCACTTTGCTTTGCAAGACCGGGAGAACATGCCAAGCT
TGTGTCTGAACTGCTGTGCCGGCGCGGGAACCTATCGTACCGCTGCTATT
CCTCGAGCTCTTACCTAAACCTATGCGGCTGACTCGGGCTTGTCGCTGAA
GTGCTGTACCGGGCTTTCGGATAGGCGCCTGGTCGAAAGCAAGGCGGGCG
GAGTACATGGGCGGCGGAAAGCCAACCACGATTTTCTTCCAGTTTCTGTG
TGATGGAAGAGTATGCCGCGCAGAGCATCTCATCGTCACTTTTTGGGGCA
TCGCTGAAGATTTTGCAATGTGCTACTGTAGCAGGATGTGCCGGGGGGTG
CTGAGACCTTTGACCTTGGGGTGTGCCGTGAAAAACTCAGATGCTCATGT
GGTAATCTGGAAGAGCATCTTGAGTGAACACGGCACGGACACGTGGGGTT
GGTTCACCAAACACTGCTGATGTGCTTTTGTTCAGCAAACGGCAGCACGA
CACACTCTCTCCATACACACCCCATGATTTTGCGTGTAAACTGCGACAAC
TCTTGTGTACTGTCCATTGCGTATTGTAGGGAGGGGAAACGACATGCGAG
GAAAATGGGATCGCCCGGTGCTGCGGGTTCGAGGAGGGGACGGCCGAGTC
CTGTATGGAAAACGCCCTGCTGGAGGCGTTCTGGTGAGAGACAGAGATGC
TGACAAAGAGATGGAGACAGCAGAGAGAGAGAGAGAGAGAGACAGAGAGA
GAGAGAGAGAGAGAGAGAGGCAGAGACAGAGAGAGTTGTCATGTCATGTG
TACTGTGGCATCTTGCGTGTGTGTTCGGACGCACTGGTGCAAGAAATAGG
TCAAACGGCTGTATAGGGTGTACCTTGCTCCACCTCCCTTAGCGGTCGGC
CATATTTTTGGCTTGTTTTTTTTTTCAAGGCGCTCGAGAAGGTCATAAAG
ATGCATGCGAGGATGCGAGGCCCCACTTCTATCACGGACGGGCCATGCAG
CACACACACACACACACACATTCAGCCGGTTAGCGCGGTCGATGCTAATA
ATAAAAACACACACACACACACAGATCTTCACGCGCACCCCACCCCCCCT
TTATTAATGCCTCCTGTCTTTGCCTGTTTTGTTACGTCAGGACGTGCACG
CTCGCAGACGTCGGTTGCTCTCTCGAAGACATGCCTTGCTCGACGACAGC
GGTAGTTGCGGTATCCGCCGCCACGCCGTCCATCAGGCCCCTTTCGTCGT
CCATGTACGGGACTCCCGGTGCCGGGCTGGCTGCTGCTGTCGTTGCTGCT
TCCGCCGCTGCGATTGGGCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17299:703..3526-

>mRNA_Ecto-sp13_S_contig17299.5156.1 ID=mRNA_Ecto-sp13_S_contig17299.5156.1|Name=mRNA_Ecto-sp13_S_contig17299.5156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17299:703..3526- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCCCGACAGCAAAACCAGCAACAGCGGCGGCGGTGGGCGTCCGT
TCCCTCGGCGTCCCTCCTTGTCTCGTTCGTCCTGGTCGTCACCTTCTCGC
CCTTGCTAGCGAGGGCCACGAGCTCGTCCTTCTTCGCCTCCTTCTGTCTG
GAGGAGACTCAGGCATGCGAGGCAGACGAAGAGTGCTACGAGTGTCTCCT
TAGCTGGCCGGCCACCGATGCGACGACGTGCACCGACTTTTCCCTTGAGG
GAGGGGAAACGACATGCGAGGAAAATGGGATCGCCCGGTGCTGCGGGTTC
GAGGAGGGGACGGCCGAGTCCTGTATGGAAAACGCCCTGCTGGAGGCGTT
CTGGACGTGCACGCTCGCAGACGTCGGTTGCTCTCTCGAAGACATGCCTT
GCTCGACGACAGCGGTAGTTGCGGTATCCGCCGCCACGCCGTCCATCAGG
CCCCTTTCGTCGTCCATGTACGGGACTCCCGGTGCCGGGCTGGCTGCTGC
TGTCGTTGCTGCTTCCGCCGCTGCGATTGGGCTGTAG
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