prot_Ecto-sp13_S_contig17299.5156.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17299.5156.1
Unique Nameprot_Ecto-sp13_S_contig17299.5156.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length179
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17299.5156.1 vs. uniprot
Match: A0A6H5JMT1_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT1_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.080e-97
Identity = 158/178 (88.76%), Postives = 163/178 (91.57%), Query Frame = 0 
Query:    1 MAPRQQNQQQRRRWASVPSASLLVSFVLVVTFSPLLARATSSSFFASFCLEETQACEADEECYECLLSWPATDATTCTDFSLEGGETTCEENGIARCCGFEEGTAESCMENALLEAFWTCTLADVGCSLEDMPCSTTAVVAVSAATPSIRPLSSSMYGTPGAGLAAAVVAASAAAIGL 178
            MAPRQ NQQQR RWASVPSASLL+S VLVVT SPLLARATSSS F+SFC+EETQACEADEECY CLLSWPATDATTCTD+SLEGGETTCEENGIA CCGFEEGTAESCMENALLEAFWTCTLADVGCSL DMPCST AVVAVS+A PSI PLSS MYG PGA LAAAVVA SAAAIGL
Sbjct:  287 MAPRQHNQQQRWRWASVPSASLLLSLVLVVTLSPLLARATSSSSFSSFCMEETQACEADEECYACLLSWPATDATTCTDYSLEGGETTCEENGIAHCCGFEEGTAESCMENALLEAFWTCTLADVGCSLGDMPCSTVAVVAVSSAAPSIGPLSS-MYGAPGAALAAAVVAVSAAAIGL 463
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17299.5156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMT1_9PHAE1.080e-9788.76PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..178
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 32..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..31
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17299contigEcto-sp13_S_contig17299:703..3511 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17299.5156.1mRNA_Ecto-sp13_S_contig17299.5156.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17299 703..3526 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17299.5156.1 ID=prot_Ecto-sp13_S_contig17299.5156.1|Name=mRNA_Ecto-sp13_S_contig17299.5156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MAPRQQNQQQRRRWASVPSASLLVSFVLVVTFSPLLARATSSSFFASFCL
EETQACEADEECYECLLSWPATDATTCTDFSLEGGETTCEENGIARCCGF
EEGTAESCMENALLEAFWTCTLADVGCSLEDMPCSTTAVVAVSAATPSIR
PLSSSMYGTPGAGLAAAVVAASAAAIGL*
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