prot_Ecto-sp13_S_contig17266.5135.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17266.5135.1
Unique Nameprot_Ecto-sp13_S_contig17266.5135.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length201
Homology
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 3.670e-115
Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0
Query:    1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSSKEKLGVSSGG 191
            GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSS+KEKLGVSS G
Sbjct: 1626 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSAKEKLGVSSAG 1816          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A6H5JQE5_9PHAE (Sister chromatid cohesion protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE5_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 3.040e-103
Identity = 168/188 (89.36%), Postives = 170/188 (90.43%), Query Frame = 0
Query:    1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSSKEKLGVS 188
            GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVV                 NPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGG GGGCSIVGPAYTLCVRPQRPSRYSCLRLL+SLFSEAKAWEL+SFVSSSKEKLGVS
Sbjct:  298 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVV-----------------NPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGMGGGCSIVGPAYTLCVRPQRPSRYSCLRLLLSLFSEAKAWELSSFVSSSKEKLGVS 468          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S2WUP5_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUP5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.450e-36
Identity = 73/164 (44.51%), Postives = 104/164 (63.41%), Query Frame = 0
Query:    6 QRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEA 169
            ++V  DQD ESSVVGGVLQ+H+A +L  LF  +  +RAA ++LLGVMLRQGLVNP+ V P ++A+ GDS+  +R EA RL  VED K+ EF+RTR+L+G+ +++  Q+    +  PLL  T           S+    Y  C+R  R  R + LR  +SLF ++
Sbjct:    1 RQVTSDQDSESSVVGGVLQLHVAKILRLLFEAHSELRAACLALLGVMLRQGLVNPLQVFPYVVAMLGDSSAEIRQEALRLALVEDDKHPEFLRTRILEGVCLSFQLQKFTCPEIAPLLMETTGPRQFKHS--SLFSTIYASCIRSNRQKRNAVLRGFLSLFQQS 162          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: W7TH99_9STRA (Sister chromatid cohesion protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH99_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.290e-36
Identity = 78/179 (43.58%), Postives = 113/179 (63.13%), Query Frame = 0
Query:    1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWR-----PLLPSTDPAAGGTGGG---CSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKA 171
            GV+V QRV+GDQD E+S+VGGV+Q HL ++   LF R+  +R AA+ +L V+ RQGLVNP+  +P L+AL  D    +RA A+R L +E  K+ EF+  R+L+G+ ++YTFQ+ +L          L+ +   + GG GG     S +GP Y+ C+R  R  RYS LR L++LF E  A
Sbjct: 1251 GVSVRQRVKGDQDAEASIVGGVIQEHLDSIKHLLFDRDDQLRTAALGILSVLHRQGLVNPLQTLPALVALQADPFSAIRAHAYRQLLIEHEKHPEFLPARILEGVSLSYTFQRRILSGRARGGTGELISAVVSSGGGEGGWEGRQSFLGPVYSTCLRQNRKHRYSFLRNLLALFEEKTA 1429          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.200e-26
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 0
Query:    1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSSKEKL 185
            G++VAQRV+GDQD ESSVVGGVLQ+H+ AV   L+H N                +GLV+P++ VP L+AL  D A  VR+EA R + VED K  + ++ R++DG+F+AY +          LLP+ DP +   G   S+    Y+ C++    +R   LR + SLF E    ++   + +++++L
Sbjct: 1282 GISVAQRVRGDQDSESSVVGGVLQLHVPAVRRLLYHENV---------------EGLVDPLETVPHLVALQSDPAAPVRSEAMRQIMVEDEKRRDVVQMRVMDGMFLAYAWTAAAPV---VLLPADDPISDAHGPS-SVFSAIYSTCIQQAFGARNVFLRHVTSLFEERSRDKVKVLMQTARDRL 1447          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S2UG10_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG10_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.830e-19
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 0
Query:    2 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSR 155
            +T +++V GDQDG+SS+ GGVL  H + +       N  +R A   L+ ++LRQG +NP++ VP L AL GD  A  VRA A +LL +E +K  + +R R+  G+  A+TFQ+ V  D +       P     GG  SI    +   V+P +  R
Sbjct: 1332 ITASKKVSGDQDGDSSIFGGVLAQHSSRLYQITSCGNAKLRLACCDLISILLRQGQINPMETVPYLFALQGDIGAPDVRALALKLLIIEGTKRPDMMRQRVRAGIKRAFTFQREVYPDKKATAVICSPG----GGVESIFASIFKESVQPSKVQR 1482          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.190e-19
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 0
Query:    2 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCS----IVGPAYTLCVRPQRPSRYSCLRLLMSLF 166
            +T + ++ GDQDG+S++VGGVL  H + +     + +  +R A + L+G +LRQGL+NP++ VP LLAL GD  +  +R  A +LL  E  K  + +R R+  G+  A+ FQ+ V     P    T      TG G +    I G  +   +R  R  R    + L+SLF
Sbjct: 1327 ITTSVKISGDQDGDSTLVGGVLTQHSSRLYKLTTNTSPAIRHACVELIGHLLRQGLINPMETVPYLLALQGDVGSPLIRQLALKLLIKEGLKRPDMLRQRVCAGVKQAFVFQRLVY----PNSTVTAVIEQDTGDGITETECIFGLIFKELIRSSRVQRQGLFKSLLSLF 1492          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: B7GD31_PHATC (Sister chromatid cohesion protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD31_PHATC)

HSP 1 Score: 93.6 bits (231), Expect = 1.330e-18
Identity = 56/170 (32.94%), Postives = 86/170 (50.59%), Query Frame = 0
Query:    2 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAK 170
            VT++ R+ GDQDG++++ GGVL  H   +      ++R VR AA+ L+G++LRQGLVNP + +P L AL GD     +R+ A  LL  E  +  + +R R+  G   AY FQ+ +               G   G   I G  +  C+   +  R    + L+S F  A+
Sbjct: 1296 VTLSNRISGDQDGDATLFGGVLTNHADRLFEMSQSKDRRVRYAALDLIGLLLRQGLVNPNECIPFLFALQGDVENAAIRSLALHLLMKEGERRPDALRQRICVGAKQAYDFQRRIYSQKDAASALITVRRGRVQGTECIFGSVFRNCISKSQKQRRGLFKNLLSFFETAE 1465          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S0C8U1_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8U1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.360e-18
Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = 0
Query:    2 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEA 169
            +++++++ GDQD ++S+VG VL  H   +       +  +R   + L+G++LRQGL+NP++ VP LLAL GD     VR  A  LL +E  K  + +R R+  G+  A+TFQ+ +  +   +    D  +      C I    Y   +   +  +    R L+SLF+ A
Sbjct:   41 ISLSKKISGDQDSDASLVGSVLNQHSTRLFQLTSSVHPKIRLVTLDLIGILLRQGLINPMETVPFLLALQGDVDVPAVRNLALNLLIMEGDKRPDMLRQRVRAGVRQAFTFQRIINKEKNVITAIVDSESENRDVEC-IFSAIYKRSLSTSKVQKQGLFRSLLSLFASA 208          
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A1Z5JG70_FISSO (Sister chromatid cohesion protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG70_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 4.510e-18
Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 0
Query:    2 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSA-GFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKA 171
            +++A+R+ GDQDG++++ GGVL  H A +      +   +R A + ++G++LRQGLVNP + +P L A+ GD+    +R+ +F  L++E  K  + +R R+  G+  A+ FQ+ V  D +          G       +    +  C+   R  R+  L+ L+SLF  + A
Sbjct: 1241 LSLAKRISGDQDGDATLFGGVLTNHAARLFDLTRSKESSIRFAVLKVIGILLRQGLVNPNEAIPYLFAMQGDTEKSQIRSLSFEYLSIEGEKRPDTLRRRICAGVKHAWEFQRLVTSDEKHASAIIVTQEGKKTTIQCVFSRVFKECIGSSRKQRHGFLKNLISLFKLSSA 1411          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSV8_ECTSI3.670e-11598.95Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JQE5_9PHAE3.040e-10389.36Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A7S2WUP5_9STRA1.450e-3644.51Sister chromatid cohesion protein (Fragment) n=1 T... [more]
W7TH99_9STRA5.290e-3643.58Sister chromatid cohesion protein n=2 Tax=Monodops... [more]
A0A835Z2V2_9STRA3.200e-2637.30Sister chromatid cohesion protein n=1 Tax=Tribonem... [more]
A0A7S2UG10_9STRA3.830e-1936.77Sister chromatid cohesion protein (Fragment) n=1 T... [more]
A0A7S4RR27_9STRA7.190e-1934.71Sister chromatid cohesion protein n=6 Tax=Ditylum ... [more]
B7GD31_PHATC1.330e-1832.94Sister chromatid cohesion protein n=3 Tax=Phaeodac... [more]
A0A7S0C8U1_9STRA4.360e-1830.77Sister chromatid cohesion protein (Fragment) n=1 T... [more]
A0A1Z5JG70_FISSO4.510e-1830.41Sister chromatid cohesion protein n=2 Tax=Fistulif... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024986Sister chromatid cohesion C-terminal domainPFAMPF12830Nipped-B_Ccoord: 21..168
e-value: 8.9E-23
score: 81.2
NoneNo IPR availablePANTHERPTHR21704:SF18NIPPED-B-LIKE PROTEINcoord: 12..170
IPR033031SCC2/Nipped-B familyPANTHERPTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDcoord: 12..170
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 28..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17266contigEcto-sp13_S_contig17266:500..3143 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17266.5135.1mRNA_Ecto-sp13_S_contig17266.5135.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17266 500..3145 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17266.5135.1 ID=prot_Ecto-sp13_S_contig17266.5135.1|Name=mRNA_Ecto-sp13_S_contig17266.5135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLG
VMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTR
LLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRP
QRPSRYSCLRLLMSLFSEAKAWELASFVSSSKEKLGVSSGGGGDVGSGGR
G
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024986Nipped-B_C
IPR033031SCC2/Nipped-B
IPR016024ARM-type_fold