mRNA_Ecto-sp13_S_contig17261.5133.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17261.5133.1
Unique NamemRNA_Ecto-sp13_S_contig17261.5133.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17261.5133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17261contigEcto-sp13_S_contig17261:992..3530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_002200.1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462901.8755536-CDS-Ecto-sp13_S_contig17261:991..10701681462901.8755536-CDS-Ecto-sp13_S_contig17261:991..1070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17261 992..1070 -
1681462901.8865476-CDS-Ecto-sp13_S_contig17261:3450..35181681462901.8865476-CDS-Ecto-sp13_S_contig17261:3450..3518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17261 3451..3518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462901.8963127-UTR-Ecto-sp13_S_contig17261:3518..35301681462901.8963127-UTR-Ecto-sp13_S_contig17261:3518..3530Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17261 3519..3530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17261.5133.1prot_Ecto-sp13_S_contig17261.5133.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17261 992..3518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17261.5133.1

>prot_Ecto-sp13_S_contig17261.5133.1 ID=prot_Ecto-sp13_S_contig17261.5133.1|Name=mRNA_Ecto-sp13_S_contig17261.5133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MRGQSPAALPLPVDHRTRPILTCSFSDTSTTCDFRPLSTMGVPCGCCG*
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mRNA from alignment at Ecto-sp13_S_contig17261:992..3530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17261.5133.1 ID=mRNA_Ecto-sp13_S_contig17261.5133.1|Name=mRNA_Ecto-sp13_S_contig17261.5133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17261:992..3530- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCACGAAAGCATGAGGGGACAATCACCGGCTGCTTTGCCGCTCCCCGT
TGACCACCGAACAAGACCTATCCTGACCTGGTAGGCCCTGCGTTGCGCAA
GCCACATCACGCCTGCAGCAACATGTGCAAGGTATCGATCGTATGCTGCT
CTGTTTTGCTCCTCGCTCGACACGAGACGCCACGGGAGGCGCAGCGTTGC
AGCAGTATCGCGCGTAGAAGGTGCAGCGCATTTCGCTTAGGTCGCGATGA
TGGTGATGCCCTGTATGGCTGGTTGCTTACGGCACTGGGACTCCAAGCTT
ATGCGCCTCGTCTGTATCCAAACACTCGTGTTCCCTGTGGGCGAACAAGG
TGGGATGTTCCTGGCCAACCAAAGAAGAGGGTGGCGCGGCACAAAGCCAA
GGCCCCCAGCAGTAAGTAAGTAAGACGGGCAGCTGTATCCTTAAGGTGCC
ATCTCGCAGGCGACGGCTTCGGCTACTGTTGCGTTCCATCGACCATGGTC
TCACCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCCTTTTGGCCCGAGGGGTGAATTGAAAAGCGCTCTTGATTTCTCAGTC
AACCCCTGCCCATAAGTGCCGCCGAATGAGACCAACCTGACTTTTTTGCT
GTTTCGACTGCCCTATGCATGCAACACAGACCCAGCATATCATCCTGCAG
AGCTACGCCACATGCAGGGCTTACACCACATGAATCGCAGACCAAAACTG
CTGTGATAGCACGGCTACGACAGCTCGGAGGCCAGCGCTGACAACTGATG
GTGATCCCGCCAACACGCGCAGTTTCTACGAATACCAAAAGTAGTTTTTG
CACATGAGATGCACCGCCCGCATGGACCGATTTTCGAAGCCCAGTGACTC
TGCAACGCACAAAGAGGGTGCCGAAAATGGCGGTGCAACTATCTCGTTGA
TATCTTTCCGCGAACGTATCGCTTGATTCTGGCGCGTCGTGTGGAGTAAT
CGAATTTTGAAAATTGAAAATCAGTCCGAGAGGGACAATATTTCCAAAAC
CTACAGACGGTATATGTTGTTCCTTCGCGACAGCGAATTGCTGTTGCAAT
GCTGCATGCGAATCCCGGGGCGTTAGTTATACGAACTGGGATTTCCTCCC
ACATTTCGGTCGAGATTGTGGCCTCCGCAACTATTGCTGTAACTTGGGGG
AATTGCTAGAACAAGCTCGTTTGACTTGAATGCTCCAACACATAACCGCC
TGGGTTCCCGCGACCAGCGGGCAGTCATCGTCTCCGCCTCAAATCCTCGC
GGCAGAAAGCATGCAACATGTCGCCCTACACCTTGGATTTGAATTTTGAC
GGTGGCGGATTCATCACAGCGTCGCCCCCCCCCGAAGCAACGAAGCTTTC
CGTCGAATTTTAGTGAAGCAGGTTCACTCTCGAAACTGATCATATGATGC
AAAAAATAGGTGGATAGAACTCTCCACAATTGCATGCAATCCTTTTTTCT
TTTCGACCTGCCGCGTCCTCTCCCCTTTAGACTTGTGGCTGTGGTGTTGG
AACAGCAGGGCTACGTGAGCCCTTTCCTCTTGTGGTACCTGATGCACACT
GTTGGACAAGACGCGATGGCGTTTTGGTCGACGCGGTCCAGATACGGGAC
AGGGCATCACAAAATTCGTTTCACGGGGAGAGGCGGTTACTTTAAAAGCA
GCGCGCCAGCGGAGGCCAAAAGCCTGCGAACGAACGCGTCATGAGCGCGA
CCGAAATGCATCGTGCGCAGAGAAACCTGTTCGTCTTCCCTGTGAGGATT
GGATGGGTTTCGTCCGCAGATTTTCTGTGCTCTTGCCGTGCTGACGGGTA
CGCTGTGGTTGTGTTTTGTTTGTTTGCCTTTCGGCCGAGTTGTATTTACC
GCGCTGGCGGCGGGGGGTCCCGGGCAGTTTTTGCCCTACGGGTCTCCCCG
CTAGCGTTCATTCCGCGTAATCCCCAAGAGAAAACTCAAGGCAACATAGT
ACCTGCGGCGTCCTGTCTTGTGGCTTCCCACAGTCCTCGCCACCACGCGC
GTGGCGTCGTTTTCGATGCTGATGTGCGGGTTGTGAGGTTGTGGGGGTGT
CCAGTGAGACGTTTTTCCCACCGCCGCGTGTCTCCATTGCCGTTACATTT
CTTCTCCGTTTTCTGTATTTTGTAGACGCTCGGTTGTGATAATGTCGGAG
TTTGCAGGCGTGGCCTGCGTTTTTCTTTATCCTCTTGTTCGTGTCCAGCT
GACAGAACGAGACGGCGAGGGCCGTGCGCGTCTCAGTGTTCACAACATGT
TTCTTCTTGCGTGTCAAGTTTTTGTTGTTTGGTGACGAATACACCGACAC
TGACCAGCGCGAGGTTTTGGCTGCTTGTTGCGTGCCCTTGAGTGACGATC
ACCCCCGCACTACCCTCGTCGTTTTTTTGGTTCGGTGCCCGAATTTCCTC
ATGTACGAAGTTCTTTTTCCGACACGTCGACCACCTGTGACTTTCGGCCA
CTGTCAACGATGGGTGTCCCGTGCGGGTGCTGTGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17261:992..3530-

>mRNA_Ecto-sp13_S_contig17261.5133.1 ID=mRNA_Ecto-sp13_S_contig17261.5133.1|Name=mRNA_Ecto-sp13_S_contig17261.5133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17261:992..3530- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGGACAATCACCGGCTGCTTTGCCGCTCCCCGTTGACCACCGAAC
AAGACCTATCCTGACCTGTTCTTTTTCCGACACGTCGACCACCTGTGACT
TTCGGCCACTGTCAACGATGGGTGTCCCGTGCGGGTGCTGTGGATGA
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