prot_Ecto-sp13_S_contig17260.5132.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17260.5132.1
Unique Nameprot_Ecto-sp13_S_contig17260.5132.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length317
Homology
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: A0A6H5KKF2_9PHAE (HTH_40 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF2_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 2.600e-144
Identity = 231/260 (88.85%), Postives = 236/260 (90.77%), Query Frame = 0
Query:    1 MHEMPDLVLQRSDANGSRVEGTSTAAGSPRRCDVTAAATGSEGKSKARAGVDARPARGRQEMATASRDAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLAATAGSGKQPAVAAAGGHRCPSEAAAPAASPETSPKIPGHHKAKAEATNVGVAVSPMMPLASNSSHLLSDEQVDDGTGLATPTTSGRSAPAVEPVGTSCGHYTTTTSTVLNGQYSAV 260
            MHEMPDLVLQRSDANGSRVE TS AAGSPRRCD TAAA  SEGK +AR GVDARPARG QEMATASR+AETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDAD+EEEIVTALLAATAGSGKQPAVAAAGG   PS+AAAPAAS ETSPKIP HHKAKAEATNVGVAVSPMMPLASNS   LSD QVDDG GLATPTTSGRSAPAVEPVGTSCGH TT T+ VL G  SAV
Sbjct:    1 MHEMPDLVLQRSDANGSRVEDTSAAAGSPRRCDGTAAAACSEGKGQARGGVDARPARGGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADEEEEIVTALLAATAGSGKQPAVAAAGGDCGPSKAAAPAASSETSPKIPDHHKAKAEATNVGVAVSPMMPLASNSRPSLSDLQVDDGIGLATPTTSGRSAPAVEPVGTSCGHNTTPTTPVLKGPCSAV 260          
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: D7FM66_ECTSI (WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' exonuclease/ nucleic acid binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM66_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.190e-58
Identity = 106/139 (76.26%), Postives = 113/139 (81.29%), Query Frame = 0
Query:    1 MHEMPDLVLQRSDANGSRVEGTSTAAGSPRRCDVTAAATGSEGKSKARAGVDARPARGRQEMATASRDAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYD-----WTRVGIDADK 134
            MHEMPDLVLQRSDANG RVEGTS AAGSPRRCDV AAA G EGK +AR GVDA+PA   QEMATASR+AETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLS  +  GL  D     W  + +D  +
Sbjct:  107 MHEMPDLVLQRSDANGPRVEGTSAAAGSPRRCDVNAAAAGGEGKGQARGGVDAQPAXXGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSADLPNGLIVDRLHRSWASLRLDTSR 245          
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: A0A7S0ZVH3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVH3_NOCSC)

HSP 1 Score: 57.8 bits (138), Expect = 1.140e-5
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 0
Query:   69 AETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLA 144
            AE +T   LP +K   HRL+ E+GL+ D++AE+R  +A TVR YL+D I AG  YD     + AD    I  A  A
Sbjct:  381 AEASTILDLPPAKRLCHRLFCENGLTADSIAELRGVQAGTVRSYLADAIAAGHAYDLADFELSADDRTAITVAFAA 456          
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: A0A7S1WRC5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WRC5_ALECA)

HSP 1 Score: 53.9 bits (128), Expect = 1.520e-5
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 0
Query:   77 LPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLA 144
            LP +K   +RL+ E+GL+ D++AE+R  + +TV GYL+D I AG  YD     + A   E I  AL A
Sbjct:    2 LPPAKRCVYRLFFENGLAADSIAELRGVQTSTVLGYLTDAIAAGYAYDLADFELSAADREAITKALAA 69          
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: A0A4P1RN19_LUPAN (ATP-dependent DNA helicase n=3 Tax=Lupinus TaxID=3869 RepID=A0A4P1RN19_LUPAN)

HSP 1 Score: 55.5 bits (132), Expect = 7.960e-5
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0
Query:   76 RLPLSKLETHRLWHEDGLSVDAVAEVRCNKA----NTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLAA 145
            +LP +KLE  R+WHEDGLS+  +A      A     TV  YL +  + GLP+DWTR        +EI+  +  A
Sbjct:  647 KLPPAKLEAWRMWHEDGLSIQMIANFPGRSAPIKEQTVAEYLLEAAQDGLPFDWTRYSEMIGLTKEIILQIQGA 720          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KKF2_9PHAE2.600e-14488.85HTH_40 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FM66_ECTSI1.190e-5876.26WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' ... [more]
A0A7S0ZVH3_NOCSC1.140e-543.42Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S1WRC5_ALECA1.520e-542.65Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A4P1RN19_LUPAN7.960e-539.19ATP-dependent DNA helicase n=3 Tax=Lupinus TaxID=3... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029491Helicase Helix-turn-helix domainPFAMPF14493HTH_40coord: 81..144
e-value: 8.6E-10
score: 39.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17260contigEcto-sp13_S_contig17260:89..1886 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17260.5132.1mRNA_Ecto-sp13_S_contig17260.5132.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17260 83..2094 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17260.5132.1 ID=prot_Ecto-sp13_S_contig17260.5132.1|Name=mRNA_Ecto-sp13_S_contig17260.5132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
MHEMPDLVLQRSDANGSRVEGTSTAAGSPRRCDVTAAATGSEGKSKARAG
VDARPARGRQEMATASRDAETTTRPRLPLSKLETHRLWHEDGLSVDAVAE
VRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLAATAGSG
KQPAVAAAGGHRCPSEAAAPAASPETSPKIPGHHKAKAEATNVGVAVSPM
MPLASNSSHLLSDEQVDDGTGLATPTTSGRSAPAVEPVGTSCGHYTTTTS
TVLNGQYSAVCCCCCCCCCLALCGRGSAAEAEHYGLGVGKSNRRCKETGE
LHRRQRYQQHRQQPQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029491Helicase_HTH