mRNA_Ecto-sp13_S_contig17260.5132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17260.5132.1
Unique NamemRNA_Ecto-sp13_S_contig17260.5132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: A0A6H5KKF2_9PHAE (HTH_40 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF2_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 3.770e-143
Identity = 231/260 (88.85%), Postives = 236/260 (90.77%), Query Frame = 1 
Query:    7 MHEMPDLVLQRSDANGSRVEGTSTAAGSPRRCDVTAAATGSEGKSKARAGVDARPARGRQEMATASRDAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLAATAGSGKQPAVAAAGGHRCPSEAAAPAASPETSPKIPGHHKAKAEATNVGVAVSPMMPLASNSSHLLSDEQVDDGTGLATPTTSGRSAPAVEPVGTSCGHYTTTTSTVLNGQYSAV 786
            MHEMPDLVLQRSDANGSRVE TS AAGSPRRCD TAAA  SEGK +AR GVDARPARG QEMATASR+AETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDAD+EEEIVTALLAATAGSGKQPAVAAAGG   PS+AAAPAAS ETSPKIP HHKAKAEATNVGVAVSPMMPLASNS   LSD QVDDG GLATPTTSGRSAPAVEPVGTSCGH TT T+ VL G  SAV
Sbjct:    1 MHEMPDLVLQRSDANGSRVEDTSAAAGSPRRCDGTAAAACSEGKGQARGGVDARPARGGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADEEEEIVTALLAATAGSGKQPAVAAAGGDCGPSKAAAPAASSETSPKIPDHHKAKAEATNVGVAVSPMMPLASNSRPSLSDLQVDDGIGLATPTTSGRSAPAVEPVGTSCGHNTTPTTPVLKGPCSAV 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: D7FM66_ECTSI (WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' exonuclease/ nucleic acid binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM66_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 4.450e-59
Identity = 108/141 (76.60%), Postives = 115/141 (81.56%), Query Frame = 1 
Query:    1 QTMHEMPDLVLQRSDANGSRVEGTSTAAGSPRRCDVTAAATGSEGKSKARAGVDARPARGRQEMATASRDAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYD-----WTRVGIDADK 408
            QTMHEMPDLVLQRSDANG RVEGTS AAGSPRRCDV AAA G EGK +AR GVDA+PA   QEMATASR+AETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLS  +  GL  D     W  + +D  +
Sbjct:  105 QTMHEMPDLVLQRSDANGPRVEGTSAAAGSPRRCDVNAAAAGGEGKGQARGGVDAQPAXXGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSADLPNGLIVDRLHRSWASLRLDTSR 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: A0A7S0ZVH3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVH3_NOCSC)

HSP 1 Score: 57.8 bits (138), Expect = 1.900e-5
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  211 AETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLA 438
            AE +T   LP +K   HRL+ E+GL+ D++AE+R  +A TVR YL+D I AG  YD     + AD    I  A  A
Sbjct:  381 AEASTILDLPPAKRLCHRLFCENGLTADSIAELRGVQAGTVRSYLADAIAAGHAYDLADFELSADDRTAITVAFAA 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Match: A0A7S1WRC5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WRC5_ALECA)

HSP 1 Score: 53.9 bits (128), Expect = 2.010e-5
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  235 LPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLA 438
            LP +K   +RL+ E+GL+ D++AE+R  + +TV GYL+D I AG  YD     + A   E I  AL A
Sbjct:    2 LPPAKRCVYRLFFENGLAADSIAELRGVQTSTVLGYLTDAIAAGYAYDLADFELSAADREAITKALAA 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17260.5132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KKF2_9PHAE3.770e-14388.85HTH_40 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FM66_ECTSI4.450e-5976.60WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' ... [more]
A0A7S0ZVH3_NOCSC1.900e-543.42Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S1WRC5_ALECA2.010e-542.65Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17260contigEcto-sp13_S_contig17260:83..2094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score198.7
Seed ortholog evalue4e-48
Seed eggNOG ortholog2880.D7FM66
Preferred nameWRN
Model size1165
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons3
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
Ec32 ortholog description3'-5' exonuclease domain
Ec32 orthologEc-16_004890.1
EC3.1.11.1,3.6.4.12
Cds size951
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462901.7963393-UTR-Ecto-sp13_S_contig17260:82..881681462901.7963393-UTR-Ecto-sp13_S_contig17260:82..88Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17260 83..88 +
1681462901.8355508-UTR-Ecto-sp13_S_contig17260:1886..20941681462901.8355508-UTR-Ecto-sp13_S_contig17260:1886..2094Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17260 1887..2094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462901.8080418-CDS-Ecto-sp13_S_contig17260:88..3051681462901.8080418-CDS-Ecto-sp13_S_contig17260:88..305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17260 89..305 +
1681462901.8170702-CDS-Ecto-sp13_S_contig17260:740..8661681462901.8170702-CDS-Ecto-sp13_S_contig17260:740..866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17260 741..866 +
1681462901.826439-CDS-Ecto-sp13_S_contig17260:1278..18861681462901.826439-CDS-Ecto-sp13_S_contig17260:1278..1886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17260 1279..1886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17260.5132.1prot_Ecto-sp13_S_contig17260.5132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17260 89..1886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17260.5132.1

>prot_Ecto-sp13_S_contig17260.5132.1 ID=prot_Ecto-sp13_S_contig17260.5132.1|Name=mRNA_Ecto-sp13_S_contig17260.5132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
MHEMPDLVLQRSDANGSRVEGTSTAAGSPRRCDVTAAATGSEGKSKARAG
VDARPARGRQEMATASRDAETTTRPRLPLSKLETHRLWHEDGLSVDAVAE
VRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADKEEEIVTALLAATAGSG
KQPAVAAAGGHRCPSEAAAPAASPETSPKIPGHHKAKAEATNVGVAVSPM
MPLASNSSHLLSDEQVDDGTGLATPTTSGRSAPAVEPVGTSCGHYTTTTS
TVLNGQYSAVCCCCCCCCCLALCGRGSAAEAEHYGLGVGKSNRRCKETGE
LHRRQRYQQHRQQPQR*
back to top

mRNA from alignment at Ecto-sp13_S_contig17260:83..2094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17260.5132.1 ID=mRNA_Ecto-sp13_S_contig17260.5132.1|Name=mRNA_Ecto-sp13_S_contig17260.5132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2012bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17260:83..2094+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACCATGCACGAGATGCCGGACTTGGTGCTGCAGAGATCCGACGCGAA
CGGGTCCAGAGTCGAAGGCACGTCGACGGCGGCAGGTAGCCCGAGGAGGT
GTGACGTCACCGCTGCTGCTACAGGCAGTGAGGGCAAGAGCAAGGCGCGG
GCGGGAGTCGACGCGCGGCCGGCGCGGGGGAGGCAGGAGATGGCGACTGC
CTCCAGGGACGCTGAGACTACGAGTGGGTGACACATAGACGGGGAGTCAA
TGCTCCCACTTTGTTCCTCGAGAGTTTGTGTTGCCCTAAACGCCTTTTTT
TCGAAGTAAAAAGGGCAGTGTGTGCTGCCGCCAAATCCCGTGTTGGAGGT
CGTGCGTGCACCGCAACGCGGAAGGATGAAACGTGGGCGTTTGCCATTGG
GCAACGAGGATTCTTGCCCAAAAATTAACATGCGTGTTCCCGCGTGTGCT
TGCTGCGTGTTTTTTCAACTTCAGAGCCAGCAGTGTTTTGCCCCCACTTC
GGCGCTCCAACTGACACATCATTTTGCCCGTGGAGTCGAGTTGCCCTGCA
GTATTTGTTGATCTCTTGTTGGAATCACAACCACAAACCACGGGCAGCAA
TGGTTCTTACCTTTCACTCGTCCGCTTCTCGCCTCCTTCTATCTATCTGG
CTTGAAAGCACGGCCGCGATTGCCGTTGTCCAAGCTTGAGACGCACCGCC
TTTGGCACGAGGACGGGCTGTCCGTGGATGCCGTGGCGGAAGTGCGGTGC
AACAAGGCCAACACGGTCCGGGGATACCTTTCAGGTTGGTTGGTTTTGAT
TTCATCGCACGTTTGTAAGATATAGATGTACTGCTGTCCAGTATCCGGCG
CTGGATTGGCCCACGCTATAATCCGAAACTGCTTGCATACCTTCCAGCAC
ACCTTGGGAGTCCTGTCCAATCAACATTATTTGGCATGCAGCATCAGAAA
ACCACTAGCGGAAGTGCGCCCCTCGAGTTAATGTTTGCAGTCGTCCCTGC
TTGAACGACACTCGCCGTTTTTCTTCAACGAAAGTGCCCTCAAGGCGGGG
AAGATTTGTTGTTACAAGACTGCACCAAAGCATGTTGGTACGACGACATG
CCATTTAGTCCAGCTGTCGCACGCCCCTCTCTGCGCTTGACACTCTGCTG
ATGCTGGGCTTGCAGCTGACCTTGCTAACCGATTGATCGTTGACAGACTG
CATCGAAGCTGGGCTTCCCTACGACTGGACACGAGTCGGCATCGACGCTG
ACAAGGAGGAGGAGATCGTCACAGCTCTCTTGGCGGCGACGGCGGGTAGC
GGCAAGCAACCAGCAGTAGCGGCAGCAGGAGGGCACCGTTGTCCGTCTGA
AGCTGCAGCGCCGGCGGCCTCACCGGAAACATCTCCCAAGATTCCCGGCC
ACCACAAGGCAAAGGCGGAAGCAACGAATGTGGGCGTCGCGGTGTCGCCC
ATGATGCCGCTGGCAAGCAACTCAAGCCATTTGCTGAGCGATGAGCAGGT
CGATGATGGCACCGGTCTCGCCACGCCGACGACCAGCGGTCGCAGCGCGC
CTGCCGTCGAGCCCGTGGGCACCAGTTGTGGCCATTACACCACTACCACT
TCTACTGTACTCAACGGTCAATATTCGGCGGTGTGCTGCTGCTGCTGCTG
CTGCTGCTGCCTCGCACTCTGCGGACGGGGAAGTGCTGCCGAGGCCGAAC
ACTACGGACTCGGAGTCGGCAAGTCCAACCGTCGATGCAAAGAGACTGGC
GAGCTCCACCGACGGCAGCGCTACCAGCAGCACCGCCAACAGCCGCAAAG
ATAGCAGCCCCGGCATGGATGAAAGCGCCGGCTGGAGTGACAGTGATGCT
GGAAGACACGGAACGCTGGCAGGGACGGCAAGCGAGACATGCGCTGCAGG
GCGGTGGGAATCTGTGAGGCTGAAAGACGTGAAAGAACTGGCACTCCGTG
CGGAGTACTGGGAGATTCGCATGGTCTTGGCGAGGCTCAAGTCTGGGTAC
GGCACCCGATGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17260:83..2094+

>mRNA_Ecto-sp13_S_contig17260.5132.1 ID=mRNA_Ecto-sp13_S_contig17260.5132.1|Name=mRNA_Ecto-sp13_S_contig17260.5132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17260:83..2094+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGAGATGCCGGACTTGGTGCTGCAGAGATCCGACGCGAACGGGTC
CAGAGTCGAAGGCACGTCGACGGCGGCAGGTAGCCCGAGGAGGTGTGACG
TCACCGCTGCTGCTACAGGCAGTGAGGGCAAGAGCAAGGCGCGGGCGGGA
GTCGACGCGCGGCCGGCGCGGGGGAGGCAGGAGATGGCGACTGCCTCCAG
GGACGCTGAGACTACGACACGGCCGCGATTGCCGTTGTCCAAGCTTGAGA
CGCACCGCCTTTGGCACGAGGACGGGCTGTCCGTGGATGCCGTGGCGGAA
GTGCGGTGCAACAAGGCCAACACGGTCCGGGGATACCTTTCAGACTGCAT
CGAAGCTGGGCTTCCCTACGACTGGACACGAGTCGGCATCGACGCTGACA
AGGAGGAGGAGATCGTCACAGCTCTCTTGGCGGCGACGGCGGGTAGCGGC
AAGCAACCAGCAGTAGCGGCAGCAGGAGGGCACCGTTGTCCGTCTGAAGC
TGCAGCGCCGGCGGCCTCACCGGAAACATCTCCCAAGATTCCCGGCCACC
ACAAGGCAAAGGCGGAAGCAACGAATGTGGGCGTCGCGGTGTCGCCCATG
ATGCCGCTGGCAAGCAACTCAAGCCATTTGCTGAGCGATGAGCAGGTCGA
TGATGGCACCGGTCTCGCCACGCCGACGACCAGCGGTCGCAGCGCGCCTG
CCGTCGAGCCCGTGGGCACCAGTTGTGGCCATTACACCACTACCACTTCT
ACTGTACTCAACGGTCAATATTCGGCGGTGTGCTGCTGCTGCTGCTGCTG
CTGCTGCCTCGCACTCTGCGGACGGGGAAGTGCTGCCGAGGCCGAACACT
ACGGACTCGGAGTCGGCAAGTCCAACCGTCGATGCAAAGAGACTGGCGAG
CTCCACCGACGGCAGCGCTACCAGCAGCACCGCCAACAGCCGCAAAGATA
G
back to top