prot_Ecto-sp13_S_contig17255.5126.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig17255.5126.1
Unique Name	prot_Ecto-sp13_S_contig17255.5126.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	264

Homology

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BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Match: D8LMU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU6_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 4.490e-120
Identity = 216/264 (81.82%), Postives = 226/264 (85.61%), Query Frame = 0

Query:    1 RAEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAVVCLRAIGFLAARVSSRQRRRRGAPEAXXXXXXXXXXXXXSINTSGNTLGVGSSSGRDTSSVNNNNGEGITNTNDTGIDGSSYHNISENTTDTGGGVNRSAGSFDGGTSSPSLSLATSGGXGPSPTPLRTAGLRTAQTPRPSRRRRSLPGGAGGAVKTTFERTPPFAITGTAPVAAAPTEEISSMLSEQAALKLSAGGGPANMSTSFPIEPPRVPSPWEERRPAPPD 264
            RAEDELRR FFAEVGAVLAALGAAPALRAPKKLQGDA VCLRA+GFLAARVSSRQ RRR APEA    XX       SINTSGNTLGV SSSGRDT+SV+NNNGEGIT+TNDTGI G S HNISE+T DTGGGV+RSAG FDGG S   LSLATSGG GPSPTPLRTAGLRTA+TPRPSRRRRSLP GAGGA    FERTPPFA+ G A  AAAPTEEISS+LSEQAALKLSAGG PA+MST FPIEP RVPSPWEERRPAPPD
Sbjct:   81 RAEDELRRTFFAEVGAVLAALGAAPALRAPKKLQGDAGVCLRAVGFLAARVSSRQLRRRSAPEAAPAPXXASTGPTPSINTSGNTLGVDSSSGRDTNSVSNNNGEGITSTNDTGIHGGSNHNISESTADTGGGVDRSAGRFDGGASPSCLSLATSGGGGPSPTPLRTAGLRTARTPRPSRRRRSLPAGAGGAGNAAFERTPPFAVAGAASAAAAPTEEISSLLSEQAALKLSAGGRPASMSTPFPIEPARVPSPWEERRPAPPD 344

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BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Match: A0A6H5J9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B9_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.530e-60
Identity = 139/222 (62.61%), Postives = 148/222 (66.67%), Query Frame = 0

Query:    1 RAEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAVVCLRAIGFLAARVSSRQRRRRGAPEAXXXXXXXXXXXXXSINTSGNTLGVGSSSGRDTSSVNNNNGEGITNTNDTGIDGSSYHNISENTTDTGGGVNRSAGSFDGGTSSPSLSLATSGGXGPSPTPLRTAGLRTAQTPRPSRRRRSLPGGAGGAVKTTFERTPPFAITGTAPVAAAPTEEISSM 222
            R EDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDA VC RA+GFLAARVSS QRRR+ APEA             SINTSGNTLGVGSS GRDT+SV+NNN                            GGV+RSAG FDGG SS          X PSPTPLRTAGLRTA TPRPSRR+RSLP GA GA     ER PPFA+ G A  AAAPTEE+ S+
Sbjct:   27 RTEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAGVCFRAVGFLAARVSSHQRRRKSAPEAAPAPAPASTGPTPSINTSGNTLGVGSSGGRDTNSVSNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVDRSAGRFDGGASSSXXXXXXXXXXXPSPTPLRTAGLRTAHTPRPSRRKRSLPAGARGAGNAACERAPPFAVAGVASAAAAPTEEVYSL 248

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BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Match: A0A6H5K854_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K854_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.470e-5
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0

Query:  240 MSTSFPIEPPRVPSPWEERRPAPPD 264
            MSTSFPIEP RVPSPWEERRPAPPD
Sbjct:    1 MSTSFPIEPARVPSPWEERRPAPPD 25

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LMU6_ECTSI	4.490e-120	81.82	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5J9B9_9PHAE	1.530e-60	62.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K854_9PHAE	4.470e-5	96.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 52..264
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..32
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..8
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 33..51
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 9..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig17255	contig	Ecto-sp13_S_contig17255:1429..2956 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig17255.5126.1	mRNA_Ecto-sp13_S_contig17255.5126.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig17255 1429..2956 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig17255.5126.1 ID=prot_Ecto-sp13_S_contig17255.5126.1|Name=mRNA_Ecto-sp13_S_contig17255.5126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
RAEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAVVCLRAIGFLAAR
VSSRQRRRRGAPEAAPAPAPASTGPTPSINTSGNTLGVGSSSGRDTSSVN
NNNGEGITNTNDTGIDGSSYHNISENTTDTGGGVNRSAGSFDGGTSSPSL
SLATSGGGGPSPTPLRTAGLRTAQTPRPSRRRRSLPGGAGGAVKTTFERT
PPFAITGTAPVAAAPTEEISSMLSEQAALKLSAGGGPANMSTSFPIEPPR
VPSPWEERRPAPPD