mRNA_Ecto-sp13_S_contig17255.5126.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17255.5126.1
Unique NamemRNA_Ecto-sp13_S_contig17255.5126.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Match: D8LMU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU6_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 4.490e-120
Identity = 216/264 (81.82%), Postives = 226/264 (85.61%), Query Frame = 1 
Query:    1 RAEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAVVCLRAIGFLAARVSSRQRRRRGAPEAXXXXXXXXXXXXXSINTSGNTLGVGSSSGRDTSSVNNNNGEGITNTNDTGIDGSSYHNISENTTDTGGGVNRSAGSFDGGTSSPSLSLATSGGXGPSPTPLRTAGLRTAQTPRPSRRRRSLPGGAGGAVKTTFERTPPFAITGTAPVAAAPTEEISSMLSEQAALKLSAGGGPANMSTSFPIEPPRVPSPWEERRPAPPD 792
            RAEDELRR FFAEVGAVLAALGAAPALRAPKKLQGDA VCLRA+GFLAARVSSRQ RRR APEA    XX       SINTSGNTLGV SSSGRDT+SV+NNNGEGIT+TNDTGI G S HNISE+T DTGGGV+RSAG FDGG S   LSLATSGG GPSPTPLRTAGLRTA+TPRPSRRRRSLP GAGGA    FERTPPFA+ G A  AAAPTEEISS+LSEQAALKLSAGG PA+MST FPIEP RVPSPWEERRPAPPD
Sbjct:   81 RAEDELRRTFFAEVGAVLAALGAAPALRAPKKLQGDAGVCLRAVGFLAARVSSRQLRRRSAPEAAPAPXXASTGPTPSINTSGNTLGVDSSSGRDTNSVSNNNGEGITSTNDTGIHGGSNHNISESTADTGGGVDRSAGRFDGGASPSCLSLATSGGGGPSPTPLRTAGLRTARTPRPSRRRRSLPAGAGGAGNAAFERTPPFAVAGAASAAAAPTEEISSLLSEQAALKLSAGGRPASMSTPFPIEPARVPSPWEERRPAPPD 344
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BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Match: A0A6H5J9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B9_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.530e-60
Identity = 139/222 (62.61%), Postives = 148/222 (66.67%), Query Frame = 1 
Query:    1 RAEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAVVCLRAIGFLAARVSSRQRRRRGAPEAXXXXXXXXXXXXXSINTSGNTLGVGSSSGRDTSSVNNNNGEGITNTNDTGIDGSSYHNISENTTDTGGGVNRSAGSFDGGTSSPSLSLATSGGXGPSPTPLRTAGLRTAQTPRPSRRRRSLPGGAGGAVKTTFERTPPFAITGTAPVAAAPTEEISSM 666
            R EDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDA VC RA+GFLAARVSS QRRR+ APEA             SINTSGNTLGVGSS GRDT+SV+NNN                            GGV+RSAG FDGG SS          X PSPTPLRTAGLRTA TPRPSRR+RSLP GA GA     ER PPFA+ G A  AAAPTEE+ S+
Sbjct:   27 RTEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAGVCFRAVGFLAARVSSHQRRRKSAPEAAPAPAPASTGPTPSINTSGNTLGVGSSGGRDTNSVSNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVDRSAGRFDGGASSSXXXXXXXXXXXPSPTPLRTAGLRTAHTPRPSRRKRSLPAGARGAGNAACERAPPFAVAGVASAAAAPTEEVYSL 248
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BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Match: A0A6H5K854_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K854_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.470e-5
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:  718 MSTSFPIEPPRVPSPWEERRPAPPD 792
            MSTSFPIEP RVPSPWEERRPAPPD
Sbjct:    1 MSTSFPIEPARVPSPWEERRPAPPD 25
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17255.5126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMU6_ECTSI4.490e-12081.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9B9_9PHAE1.530e-6062.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K854_9PHAE4.470e-596.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17255contigEcto-sp13_S_contig17255:1429..2956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size794
Hectar predicted targeting categoryother localisation
Exons2
Cds size792
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462901.352775-CDS-Ecto-sp13_S_contig17255:1428..15531681462901.352775-CDS-Ecto-sp13_S_contig17255:1428..1553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17255 1429..1553 +
1681462901.3619597-CDS-Ecto-sp13_S_contig17255:2289..29561681462901.3619597-CDS-Ecto-sp13_S_contig17255:2289..2956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17255 2290..2956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17255.5126.1prot_Ecto-sp13_S_contig17255.5126.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17255 1429..2956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17255.5126.1

>prot_Ecto-sp13_S_contig17255.5126.1 ID=prot_Ecto-sp13_S_contig17255.5126.1|Name=mRNA_Ecto-sp13_S_contig17255.5126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
RAEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAVVCLRAIGFLAAR
VSSRQRRRRGAPEAAPAPAPASTGPTPSINTSGNTLGVGSSSGRDTSSVN
NNNGEGITNTNDTGIDGSSYHNISENTTDTGGGVNRSAGSFDGGTSSPSL
SLATSGGGGPSPTPLRTAGLRTAQTPRPSRRRRSLPGGAGGAVKTTFERT
PPFAITGTAPVAAAPTEEISSMLSEQAALKLSAGGGPANMSTSFPIEPPR
VPSPWEERRPAPPD
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mRNA from alignment at Ecto-sp13_S_contig17255:1429..2956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17255.5126.1 ID=mRNA_Ecto-sp13_S_contig17255.5126.1|Name=mRNA_Ecto-sp13_S_contig17255.5126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17255:1429..2956+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCGAGGACGAGCTGCGGAGGGCTTTTTTCGCGGAGGTGGGGGCCGT
GCTTGCCGCCTTGGGCGCCGCTCCCGCCCTCAGGGCGCCGAAGAAGCTAC
AGGGAGACGCCGTCGTGTGCCTCAGGTAGTTTCCTGTGTGTGTGGACCGT
TGGTGCGCATGTGTGTATTTGTGACTCTTTCGTTCCGATGTTTGCTTTTC
TTTTTTTGGTCGGGGGGTATTTTTTCGTAAACAGGTGTCAGTGGTCCAAC
GTGGTTGAGAGCGGCCGATCGTCATCGAGAGCAACCGACCCAGTAGCGGA
CTCTTCGTGCAACCGATCGAGGCGTATCCCGTGGTGTACTGGTGACGCCA
CCCGTCGTCTGAAGATCTTCGGTCATATCTGAAAATATTCCGCAGCAGGT
GTGTAGACCATTCTGAAAACTGCGAGCTACGTTTCCTTTTCTCACTGGTC
GCTCGGCGCACTCTCTTTACTTTTGGCTGTTCGGCAAAAGCCGTCTGGCG
TACACATGGCATCTTGACCCACATCTGGTGCACAGTATACACCCGCAGCG
CTTGGACCACCGCACAGCAGACGATGAAACGCGCACAGCAGTCTTTGTTT
GGGCGCGGCAGCTTCGTCATCAGAGGCCGAAAGAGAGAAAAATTGTTGGC
TCAAGACCTTCGTCATTAACGAGTGGTAGACACACGCGTGAGGCAAGACG
ATCCCCACGTGGCATGTCTATTATATCACCCACGCACCCCCCTTGAGGTC
CCGTAGATCTGCCGAGCACCCCCGAACAGTCTTCGCCAAGAAATGTTCCT
CCACGATCGACGGCCGTGTGCCCGATGTACACGCCTACACTTTTTTCGTT
TCGCCCCGCAGGGCTATTGGATTTTTGGCGGCAAGAGTCAGCAGCCGTCA
GCGAAGGCGAAGAGGTGCTCCCGAGGCGGCGCCGGCGCCCGCACCTGCAT
CGACAGGCCCTACGCCGAGCATCAATACTTCCGGCAACACCCTCGGCGTC
GGCAGCAGCAGCGGCCGGGACACGAGTAGCGTCAACAACAACAACGGCGA
GGGCATCACCAACACCAACGACACCGGCATCGACGGCAGCAGTTATCACA
ACATCAGCGAGAACACCACCGATACCGGCGGCGGCGTCAATCGTTCTGCC
GGTTCGTTCGACGGAGGAACCTCCTCCCCCTCCCTGTCGCTGGCGACCTC
CGGCGGTGGCGGGCCCTCCCCGACTCCCCTCCGCACGGCAGGGCTGAGGA
CGGCGCAGACGCCCCGCCCGTCCCGTCGAAGACGTAGCCTGCCCGGCGGC
GCCGGCGGCGCCGTCAAGACCACCTTCGAAAGAACGCCTCCGTTCGCAAT
TACGGGTACGGCACCAGTGGCGGCGGCACCGACCGAGGAAATTTCTTCGA
TGTTGTCCGAACAAGCAGCGCTGAAGCTATCGGCGGGTGGTGGGCCGGCA
AACATGTCGACGTCGTTTCCGATCGAGCCCCCAAGAGTGCCATCTCCCTG
GGAGGAAAGGAGGCCCGCTCCTCCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17255:1429..2956+

>mRNA_Ecto-sp13_S_contig17255.5126.1 ID=mRNA_Ecto-sp13_S_contig17255.5126.1|Name=mRNA_Ecto-sp13_S_contig17255.5126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17255:1429..2956+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCGAGGACGAGCTGCGGAGGGCTTTTTTCGCGGAGGTGGGGGCCGT
GCTTGCCGCCTTGGGCGCCGCTCCCGCCCTCAGGGCGCCGAAGAAGCTAC
AGGGAGACGCCGTCGTGTGCCTCAGGGCTATTGGATTTTTGGCGGCAAGA
GTCAGCAGCCGTCAGCGAAGGCGAAGAGGTGCTCCCGAGGCGGCGCCGGC
GCCCGCACCTGCATCGACAGGCCCTACGCCGAGCATCAATACTTCCGGCA
ACACCCTCGGCGTCGGCAGCAGCAGCGGCCGGGACACGAGTAGCGTCAAC
AACAACAACGGCGAGGGCATCACCAACACCAACGACACCGGCATCGACGG
CAGCAGTTATCACAACATCAGCGAGAACACCACCGATACCGGCGGCGGCG
TCAATCGTTCTGCCGGTTCGTTCGACGGAGGAACCTCCTCCCCCTCCCTG
TCGCTGGCGACCTCCGGCGGTGGCGGGCCCTCCCCGACTCCCCTCCGCAC
GGCAGGGCTGAGGACGGCGCAGACGCCCCGCCCGTCCCGTCGAAGACGTA
GCCTGCCCGGCGGCGCCGGCGGCGCCGTCAAGACCACCTTCGAAAGAACG
CCTCCGTTCGCAATTACGGGTACGGCACCAGTGGCGGCGGCACCGACCGA
GGAAATTTCTTCGATGTTGTCCGAACAAGCAGCGCTGAAGCTATCGGCGG
GTGGTGGGCCGGCAAACATGTCGACGTCGTTTCCGATCGAGCCCCCAAGA
GTGCCATCTCCCTGGGAGGAAAGGAGGCCCGCTCCTCCCGAC
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