prot_Ecto-sp13_S_contig17245.5120.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17245.5120.1
Unique Nameprot_Ecto-sp13_S_contig17245.5120.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length128
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17245.5120.1 vs. uniprot
Match: A0A6H5KLK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK4_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 2.690e-81
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0 
Query:    1 MCSVAVLLFTVSFFRPSHARHGSSKGLGLVGGVFMALFTFFQMVSILFLAKSIQEYNRYGGDAYEAKTGDTYGLGITAFVFGLIQVIIVLGCFGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH 127
            MCSVAVLLFTVSFFRPSHARHGSSKG GLVGGVFMALFTFFQMVSILFL KSIQEYNRYGG A+EAKTGDTYGLG+TAFVFGLIQVIIVLG FGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH
Sbjct:   19 MCSVAVLLFTVSFFRPSHARHGSSKGFGLVGGVFMALFTFFQMVSILFLVKSIQEYNRYGGGAFEAKTGDTYGLGMTAFVFGLIQVIIVLGFFGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH 145
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BLAST of mRNA_Ecto-sp13_S_contig17245.5120.1 vs. uniprot
Match: D7FPD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD0_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 5.630e-76
Identity = 118/127 (92.91%), Postives = 120/127 (94.49%), Query Frame = 0 
Query:    1 MCSVAVLLFTVSFFRPSHARHGSSKGLGLVGGVFMALFTFFQMVSILFLAKSIQEYNRYGGDAYEAKTGDTYGLGITAFVFGLIQVIIVLGCFGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH 127
            MCSVAVLLFTVSFFRPS AR+GSSKGLGLVGGVFMALFTF QMVSILFL KSIQEYNRYGGDA+ AKTGDTYGLGITAFVFGLIQVIIVLG FGQAANGPLLSCTRRIS  DDMGAGSATPTPRGRH
Sbjct:   92 MCSVAVLLFTVSFFRPSQARYGSSKGLGLVGGVFMALFTFCQMVSILFLVKSIQEYNRYGGDAFMAKTGDTYGLGITAFVFGLIQVIIVLGFFGQAANGPLLSCTRRISEADDMGAGSATPTPRGRH 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17245.5120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLK4_9PHAE2.690e-8195.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPD0_ECTSI5.630e-7692.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..97
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 98..127
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..70
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..19
score: 0.607
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17245contigEcto-sp13_S_contig17245:1059..2028 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17245.5120.1mRNA_Ecto-sp13_S_contig17245.5120.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17245 161..3123 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17245.5120.1 ID=prot_Ecto-sp13_S_contig17245.5120.1|Name=mRNA_Ecto-sp13_S_contig17245.5120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MCSVAVLLFTVSFFRPSHARHGSSKGLGLVGGVFMALFTFFQMVSILFLA
KSIQEYNRYGGDAYEAKTGDTYGLGITAFVFGLIQVIIVLGCFGQAANGP
LLSCTRRISAPDDMGAGSATPTPRGRH*
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