mRNA_Ecto-sp13_S_contig17242.5118.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17242.5118.1
Unique NamemRNA_Ecto-sp13_S_contig17242.5118.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17242.5118.1 vs. uniprot
Match: A0A6H5JZI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.350e-30
Identity = 106/126 (84.13%), Postives = 108/126 (85.71%), Query Frame = -1 
Query:    4 LDHNLRFTGEQAMEHRWLATPADEELGAAVGATQXXXXXXXXXXXXXXHGSGGSGSRNGSRSXXXXXXXXXXXXXSGAEDTPGVHARSGGGXXXXGSRGDIAGVRPAAAESLKGVPPSSSSTSFAT 381
            LDHNLRFTGEQAMEHRWLAT ADEELGAAVGA  XXXXXXXXXXXXXX GSGGSGSRNGSRSXXXXXXXXXXXXX G E+ PG HA  GG       RGD+AGVRPAA ESLKGVPPSSSSTSFAT
Sbjct: 1405 LDHNLRFTGEQAMEHRWLATSADEELGAAVGAXXXXXXXXXXXXXXXX-GSGGSGSRNGSRSXXXXXXXXXXXXXXGGEEPPGAHAGGGG-------RGDVAGVRPAA-ESLKGVPPSSSSTSFAT 1521
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17242.5118.1 vs. uniprot
Match: D8LD50_ECTSI (Asparagine-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD50_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.260e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  286 LDHNLRFTGEQAMEHRWLATPADEELGAAVGA 381
            LDHNLRFTGEQAMEHRWLATPADEELGAAVGA
Sbjct:  542 LDHNLRFTGEQAMEHRWLATPADEELGAAVGA 573
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17242.5118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZI2_9PHAE1.350e-3084.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD50_ECTSI1.260e-11100.00Asparagine-rich protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17242contigEcto-sp13_S_contig17242:1163..1543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size381
Hectar predicted targeting categorymitochondrion
Exons1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.8157542-CDS-Ecto-sp13_S_contig17242:1162..15431681462900.8157542-CDS-Ecto-sp13_S_contig17242:1162..1543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17242 1163..1543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17242.5118.1prot_Ecto-sp13_S_contig17242.5118.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17242 1163..1543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17242.5118.1

>prot_Ecto-sp13_S_contig17242.5118.1 ID=prot_Ecto-sp13_S_contig17242.5118.1|Name=mRNA_Ecto-sp13_S_contig17242.5118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
CRREASRAAARRHPFQRFRCCRPYTRYITPAAAAAATAAAASVNTGRILG
PATSGAPATPPAAATAAAPVSTPAPAASMPAPPHLLCSLLLLLLRRADSG
TQLLIGGSREPPMLHRLLSGESQVVVQ
back to top

mRNA from alignment at Ecto-sp13_S_contig17242:1163..1543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17242.5118.1 ID=mRNA_Ecto-sp13_S_contig17242.5118.1|Name=mRNA_Ecto-sp13_S_contig17242.5118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17242:1163..1543+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCGTCGCGAAGCTAGTCGAGCTGCTGCTCGGCGGCACCCCTTTCAACG
ATTCCGCTGCTGCCGGCCTTACACCCGCTATATCACCCCTGCTGCCGCTG
CCGCCGCCACCGCCGCCGCTGCGAGCGTGAACACCGGGCGTATCCTCGGC
CCCGCTACCAGCGGTGCTCCGGCTACCCCTCCGGCTGCCGCTACCGCTGC
GGCTCCCGTTTCGACTCCCGCTCCCGCCGCTTCCATGCCGGCGCCGCCTC
ACCTCTTGTGCAGCCTGCTGCTGCTGCTGCTGCGTCGCGCCGACAGCGGC
ACCCAGCTCCTCATCGGCGGGAGTCGCGAGCCACCGATGCTCCATCGCCT
GCTCTCCGGTGAATCGCAGGTTGTGGTCCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17242:1163..1543+

>mRNA_Ecto-sp13_S_contig17242.5118.1 ID=mRNA_Ecto-sp13_S_contig17242.5118.1|Name=mRNA_Ecto-sp13_S_contig17242.5118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17242:1163..1543+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCGTCGCGAAGCTAGTCGAGCTGCTGCTCGGCGGCACCCCTTTCAACG
ATTCCGCTGCTGCCGGCCTTACACCCGCTATATCACCCCTGCTGCCGCTG
CCGCCGCCACCGCCGCCGCTGCGAGCGTGAACACCGGGCGTATCCTCGGC
CCCGCTACCAGCGGTGCTCCGGCTACCCCTCCGGCTGCCGCTACCGCTGC
GGCTCCCGTTTCGACTCCCGCTCCCGCCGCTTCCATGCCGGCGCCGCCTC
ACCTCTTGTGCAGCCTGCTGCTGCTGCTGCTGCGTCGCGCCGACAGCGGC
ACCCAGCTCCTCATCGGCGGGAGTCGCGAGCCACCGATGCTCCATCGCCT
GCTCTCCGGTGAATCGCAGGTTGTGGTCCAG
back to top