mRNA_Ecto-sp13_S_contig17241.5117.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17241.5117.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI) HSP 1 Score: 912 bits (2358), Expect = 0.000e+0 Identity = 475/524 (90.65%), Postives = 486/524 (92.75%), Query Frame = 1
Query: 1 MGSSQETSLLDKEVDDLEYLDFRDFASDRPLATNTAPPPWELSGPREYGPSLDVNGREERVIWGLHLPYCEGAVTVEGSAANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKIAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHIFSVPEEKADGTKGDNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDAHP-------WDAAKLGVMVELRRFRLAVEVDGQYSTYLAGTDFIRAWEQQDDGKTAVRREAIDGPCEMYTAAEVADKVHEDERANEALAEQDARRYFAEGFVVPKPXXXXXXXXXXRALDDGYFSVKCDRWSPEGTSDDPKFSIRKSEFIHNVENHPAAMLPLVQYIDGLNADGMQTKAS---SWKRCKCMWLALQRRRGQANVVAVASNGCSCTGEMEL*CQVMGELHKGCIAIVE 1542
MGSSQETSLLD+EVDD EYLDFRDFA D PLATN APPPWELSGPREYGPSLDVNG+EERV+WGLHLPYCEGAVTVEG AANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAK AGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHIFSVPEEKADGTKG+NQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDA P WDAAKLGVMV++RRFRLA EVDGQ S+YLAGTD IRAWEQQDDGKTAVRRE IDGPCEMYTAAEVADKVHEDE ANEA AEQDARRYFAEGFVVPKPXXXXXXXXX RALDDG SV CDRWSPEGTSDDPKFSIRKSEF+HNVENHPAAMLPLVQYIDG NA+GMQTK S ++ LALQRRRGQANVVAVASNGCSCTGEMEL CQVMGEL KGCIAIVE
Sbjct: 1 MGSSQETSLLDEEVDDREYLDFRDFAKDNPLATNKAPPPWELSGPREYGPSLDVNGQEERVLWGLHLPYCEGAVTVEGGAANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKKAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHIFSVPEEKADGTKGNNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDAQPCRILAIYWDAAKLGVMVDVRRFRLAAEVDGQSSSYLAGTDLIRAWEQQDDGKTAVRREVIDGPCEMYTAAEVADKVHEDEGANEAPAEQDARRYFAEGFVVPKPXXXXXXXXXKRALDDGNVSVTCDRWSPEGTSDDPKFSIRKSEFMHNVENHPAAMLPLVQYIDGFNANGMQTKNSVGGTYVGMGSTSLALQRRRGQANVVAVASNGCSCTGEMELQCQVMGELQKGCIAIVE 524
BLAST of mRNA_Ecto-sp13_S_contig17241.5117.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE) HSP 1 Score: 189 bits (481), Expect = 5.270e-48 Identity = 171/531 (32.20%), Postives = 239/531 (45.01%), Query Frame = 1
Query: 40 VDDLEYLDFRDFASDRPLATNTAPPPWELSGPREYG-----PSLDVNGREERVIWGLHL--PYCEGAVTVEGSAANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKIAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHIFSVPEEKADGTKGDNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDAHP-----WDAAKLGVMVELRRFRLAVEVDGQYSTYLAGTDFIRAWEQ-QDDGKTAVRREAIDGPCEMYTAAEVADKVHEDERANEALAEQDARRYFAEGFV-------------VPKPXXXXXXXXXXRALDDGYFSVKCDRWSPEGTSDDPKFSIRKSEFIHNVENHPAAMLPLVQYIDGLNADGMQTKAS--------SWKRCKCMWLALQRRRGQANVVAVASNGCSCTGEMEL*CQVMGELHKGCI 1530
+DD Y DF+ +R + P P + G P LDV LH P T EG LR+N KA GS YPF LL + +++S+ LRG+LE+L + + G F+++ L V EHF R R Y P+LQ+++R V ++ T+ YDIP NL++DR+++ + GGK L +E AA L S HI VP + NQNG LARSTP FGFDGI + G RKVYVND + ++GV +D A+ V+V +R FR EV G G +R WE DG+ ++ +A+ G EM T E+A N R+ EGFV +PKP F+V W EG ++ P + +R+S N + P LV D NA GM K S +W+ A+QR + Q++V +AS G C GE+ L C+V+G L GC+
Sbjct: 201 LDDERYDDFQGDVDNRGSCSE----PEVFLLPEDGGGASSVPRLDV----------LHTMAPSFASCKTAEGGPEKLRHNTKARGSPFYPFATKEQQLLFVWIHVHRISKRALRGLLEILLLLHE-GQPFDVNGLAGVDPEHFYGRMRPYLPMLQLLERDVPSTHDGG-----TSSVYDIPVNLLLDRVMQIQSETALSEAYPGGKILRGEEAAANRLTSDHINCVPTRQEGNVMNSNQNGTLARSTPFFGFDGIRARVCG-RKVYVNDTCVAEVEGVVTLCRMLKIFYDEARQLVIVTVRLFRGVSEVRGVRQEERRG-GLLRVWEDCTADGEVELKADAVLGLVEMETPHEMAPAGGSQGGHNFPWD-----RFVGEGFVRRTGTKRPLQSSDLPKP-----------------FTVSESPWCMEGPAERPLWGLRRSGVHFNDTDLPFFSASLVFNCDAFNAFGMGCKHSVGGSYFGWAWRAP-----AVQRLKHQSHVGTLASPGACCRGEIGLQCEVLGLLQNGCL 682
BLAST of mRNA_Ecto-sp13_S_contig17241.5117.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE) HSP 1 Score: 189 bits (480), Expect = 6.840e-48 Identity = 167/512 (32.62%), Postives = 238/512 (46.48%), Query Frame = 1
Query: 40 VDDLEYLDFRDFASDRPLATNTAPPPWELSGPREYGPSLDVNGREERVIWGLHL--PYCEGAVTVEGSAANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKIAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQ--GGKQLSRDETAAAGLASTHIFSVPEEKADGTKGDNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDAHP-----WDAAKLGVMVELRRFRLAVEVDGQYSTYLAGTDFIRAWEQQDDGKTAVRREAIDGPCEMYTAAEVADKVHE---DERANEALAEQDARRYFAEGFVVPKPXXXXXXXXXXRALDDGYFSVKCDRWSPEGTSDDPKFSIRKSEFIHNVENHPAAMLPLVQYIDGLNADGMQTKAS---SWKRCKCMWLALQRRRGQANVVAVASNGCSCTGEMEL*CQVMGELHKGCI 1530
+DD Y DF+ +R T+ AP +E G S + LH P + TVEG A LR N KA+GSD YPF L+ + +++S+ LRG+LE+L + +G F++ L DV EHF R R Y PLL++++R V ++ G T++ YD+P NL++DR+++ PS E LSN GG+ L +E A L S H+ VP + N NG LARS P FGFDGI + G RKVYVND +C ++GV +D + V+V +R FR EV G + G +R W+ K ++ + G EM T E+A H D E Q + + PKP F+V W EG ++ P + +R+ N N P P V + D NA GM K S S+ A+QR + Q +V +AS G GE L C+++G L GC+
Sbjct: 121 LDDERYDDFQGNVDNR--GTDGAPEVFEPPGHNGGASSAPRLNK-------LHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVL-LMQYEGEPFDVRGLADVDPEHFYDRMRPYLPLLELLERDVPSTDD----GTTSSVVYDLPVNLLLDRVMQ-IPS-ETALSNAYPGGQLLRGEEATANSLTSDHVNCVPTRREGNVMNSNHNGTLARSIPFFGFDGIRARVCG-RKVYVNDTCVCEVEGVATLCRILEIFYDGERRLVLVTVRLFRGVSEVRGVGNEERRG-GLLRVWKDC-TCKLELKANDVLGLVEMETPHEMAAAGHPYPWDRFFGEGFLRQTGTKQALQSNARPKP-----------------FAVTESPWCAEGPANSPLWGLRREGVHLNNMNLPYYSAPTVFHCDAFNAFGMGCKHSIGGSYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLGNGCL 596
BLAST of mRNA_Ecto-sp13_S_contig17241.5117.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.310e-46 Identity = 172/560 (30.71%), Postives = 242/560 (43.21%), Query Frame = 1
Query: 40 VDDLEYLDFRDFASDRPLATNTAPPPWELSGPREYGPSLDVNGREERVIWGLHL--PYCEGAVTVEGSAANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKIAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQ--GGKQLSRDETAAAGLASTHIFSVPEEKADGTKGDNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDAHP-----WDAAKLGVMVELRRFRLAVEVDGQYSTYLAGTDFIRAWEQQDDGKTAVRREAIDGPCEMYTAAEVADKVHE---DERANEALAEQDARRYFAEGFVVPKPXXXXXXXXXXRALDDGYFSVKCDRWSPEGTSDDPKFSIRKSEFIHNVENHPAAMLPLVQYIDGLNADGMQTKASSW--------------------------------KRCKCM---------------WL----ALQRRRGQANVVAVASNGCSCTGEMEL*CQVMGELHKGCI 1530
+DD Y DF+ +R T+ AP +E G S + LH P + TVEG A LR N KA+GSD YPF L+ + +++S+ LRG+LE+L + +G F++ L DV EHF R R Y PLL++++R V ++ G T++ YD+P NL++DR+++ PS E LSN GG+ L +E A L S H+ VP + N NG LARS P FGFDGI + G RKVYVND +C ++GV +D + V+V +R FR EV G + G +R WE K ++ + G EM T E+A H D E Q + + PKP F+V W EG ++ P + +R+ N N P P V + D NA GM K S W + C CM W A+QR + Q +V +AS G GE L C+++G L GC+
Sbjct: 130 LDDERYDDFQGNVDNR--GTDGAPEVFEPPGHNGGASSAPRLNK-------LHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVL-LMQYEGEPFDVRGLADVDPEHFYDRMRPYLPLLELLERDVPSTDD----GTTSSVVYDLPVNLLLDRVMQ-IPS-ETALSNAYPGGQLLRGEEATANSLTSDHVNCVPTRREGNVMNSNHNGTLARSIPFFGFDGIRARVCG-RKVYVNDTCVCEVEGVATLCRILEIFYDGERRLVLVTVRLFRGVSEVRGVGNEERRG-GLLRVWEDC-TCKLELKANDVLGLVEMETPHEMAAAGHPYPWDRFFGEGFVRQTGTKRALQSNARPKP-----------------FAVTESPWCAEGPANRPLWGLRREGVHLNDMNLPYYSAPTVFHCDAFNAFGMGCKVSVWTTILMLLRDVPPDLTPSGGDKFAIAYRDSPILRLCTCMRCCGSQHSIGGSYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCL 653
BLAST of mRNA_Ecto-sp13_S_contig17241.5117.1 vs. uniprot
Match: A0A6H5J9K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K9_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.620e-34 Identity = 96/290 (33.10%), Postives = 146/290 (50.34%), Query Frame = 1
Query: 217 AVTVEGSAANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKIAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHIFSVPEEKADGTKGDNQNGELARSTPHFGFDGIMVGMDGKRKVYVNDIVMCTLDGVDDAHPW------DAAKLGVMVELRRFRLAVEV-DGQYSTYLAGTDFIRAWEQQD-DGKTAVRREAIDGPCEMYTAAEV 1062
+V + G A +N KA+ S +P+EN + Y +R +G F++DD++ + +HF RRR ++PLL+VV+ V +S T+ DIP NL+V+R ++S +E + N GGK L +E GL+S H+ SVP E A + +G LARS+P FGFDG++ RKVYVND+VM T+ + W D + ++V +RRFR+ EV D + + G +R WE++ K + I CE+YT EV
Sbjct: 24 SVLLAGGARFCAFNTKAKRSPCFPYEN-------DRSMGYSCTRHNRKG--------------FDVDDIRHITAKHFYGRRRAHHPLLEVVETFVPSSKD----NGTSVPVDDIPCNLLVNRKIQSPSFIETCVQNSGGKVLRAEEAEPNGLSSNHLCSVPTEPAGNALSTSMHGRLARSSPFFGFDGLLGARTSNRKVYVNDVVMVTMSDGNTVPVWLLEWYWDMEQATLLVAVRRFRIRNEVRDVEGGERIEG--LVRVWEEKGTSSKVILHSTTIQDLCEIYTREEV 286
BLAST of mRNA_Ecto-sp13_S_contig17241.5117.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 9.590e-19 Identity = 87/263 (33.08%), Postives = 125/263 (47.53%), Query Frame = 1
Query: 40 VDDLEYLDFRDFASDRPLATNTAP----PPWELSGPREYGPSLDVNGREERVIWGLHL--PYCEGAVTVEGSAANLRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKIAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAG-LASTHIFSVPEEKADGTKGDNQNGELARSTPHFGFDGIMVGMDGKR 807
+DD Y DF+ +R T+ P PP P + G + R+ W LH P + TVEG A LR N +A S PF LL + +++S+ L G+LE+L + +G F++ L V EHF R R Y PLL++++R V + G T++ YD+P NL+++R+++ PS + G +L R E AAA L S HI V + N NG LARSTP FG +G R
Sbjct: 114 LDDERYDDFQGNVDNR--GTDGTPEVVLPPEVFLPPGQNGGASSA----PRLNW-LHTMTPSYASSKTVEGGADKLRENTRAGRSPFDPFRTKEQQLLFVWQHVHRISQRALGGLLEVL-LMQYEGEPFDVRGLAGVDPEHFYDRMRTYLPLLELLERDVPSIHD----GTTSSVVYDLPVNLLLERVMQ-IPSETVLSEAYPGWELLRGEEAAANSLTSDHINCVATRREGNVVNSNHNGTLARSTPFFGLTAYEQECEGGR 363 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17241.5117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17241.5117.1 >prot_Ecto-sp13_S_contig17241.5117.1 ID=prot_Ecto-sp13_S_contig17241.5117.1|Name=mRNA_Ecto-sp13_S_contig17241.5117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=498bp MGSSQETSLLDKEVDDLEYLDFRDFASDRPLATNTAPPPWELSGPREYGPback to top mRNA from alignment at Ecto-sp13_S_contig17241:1009..2955- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17241.5117.1 ID=mRNA_Ecto-sp13_S_contig17241.5117.1|Name=mRNA_Ecto-sp13_S_contig17241.5117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1947bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17241:1009..2955- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17241:1009..2955- >mRNA_Ecto-sp13_S_contig17241.5117.1 ID=mRNA_Ecto-sp13_S_contig17241.5117.1|Name=mRNA_Ecto-sp13_S_contig17241.5117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17241:1009..2955- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |