mRNA_Ecto-sp13_S_contig17241.5116.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17241.5116.1
Unique NamemRNA_Ecto-sp13_S_contig17241.5116.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17241.5116.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 3.740e-57
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    1 FLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVERTQDTEGEEGMDPGGPLGDQLYDTESNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAPARA 315
            FLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVE+TQD EGEEG DPGGPLGDQLYD ESNARTRGG+LAARRRLLELKDQAS QAKESTALGVVAPARA
Sbjct:  539 FLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVEQTQDAEGEEGTDPGGPLGDQLYDIESNARTRGGLLAARRRLLELKDQASVQAKESTALGVVAPARA 643
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BLAST of mRNA_Ecto-sp13_S_contig17241.5116.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.470e-28
Identity = 63/102 (61.76%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 FLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVERTQDTEGEEGMDPGGPLGDQLYDTESNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAP 306
            FLRGGLLLLVADSPQRALM   KHPN  +RFPC+YCMVE+TQD EG       G LGDQLYD  +N RTRG +L  R +L  L      Q + S+ALGVVAP
Sbjct:   35 FLRGGLLLLVADSPQRALMCYCKHPNSFSRFPCMYCMVEQTQDNEG-------GDLGDQLYDIVANRRTRGLMLEGRSQLEALASNPVQQGQLSSALGVVAP 129
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BLAST of mRNA_Ecto-sp13_S_contig17241.5116.1 vs. uniprot
Match: A0A6H5KSU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.970e-13
Identity = 49/102 (48.04%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    1 FLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVERTQDTEGEEGMDPGGPLGDQLYDTESNARTRGGVLAARRRLLELKDQASAQAKESTALGVVAP 306
            FLRGGLL+LVADSPQRALM   KHPN  +R                       GP+GDQLYD  +N RTRG +L  R +L  L      Q   S+ALGVVAP
Sbjct:  415 FLRGGLLVLVADSPQRALMCYCKHPNSFSRR----------------------GPVGDQLYDIVTNRRTRGLMLEERSKLEALASNPVRQGHLSSALGVVAP 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17241.5116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6T4_ECTSI3.740e-5794.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6M3_ECTSI3.470e-2861.76Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KSU0_9PHAE1.970e-1348.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17241contigEcto-sp13_S_contig17241:3..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size317
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010180.2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.7370908-CDS-Ecto-sp13_S_contig17241:2..3171681462900.7370908-CDS-Ecto-sp13_S_contig17241:2..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17241 3..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17241.5116.1prot_Ecto-sp13_S_contig17241.5116.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17241 3..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17241.5116.1

>prot_Ecto-sp13_S_contig17241.5116.1 ID=prot_Ecto-sp13_S_contig17241.5116.1|Name=mRNA_Ecto-sp13_S_contig17241.5116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
FLRGGLLLLVADSPQRALMYKGKHPNKSTRFPCIYCMVERTQDTEGEEGM
DPGGPLGDQLYDTESNARTRGGVLAARRRLLELKDQASAQAKESTALGVV
APARA
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mRNA from alignment at Ecto-sp13_S_contig17241:3..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17241.5116.1 ID=mRNA_Ecto-sp13_S_contig17241.5116.1|Name=mRNA_Ecto-sp13_S_contig17241.5116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17241:3..317- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTGCGCGGGGGGCTGTTGCTGCTGGTTGCGGATTCCCCACAACGCGC
TCTGATGTACAAGGGAAAACACCCGAACAAGTCCACCAGATTCCCCTGTA
TCTATTGCATGGTAGAGCGAACGCAAGATACGGAAGGGGAAGAGGGCATG
GATCCAGGGGGGCCGCTTGGGGATCAGCTGTACGACACAGAATCAAACGC
CCGCACCAGGGGGGGGGTGCTTGCAGCCAGGCGACGACTGTTGGAACTAA
AGGACCAAGCGTCCGCCCAAGCCAAGGAATCGACTGCGCTTGGAGTCGTT
GCTCCAGCAAGAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17241:3..317-

>mRNA_Ecto-sp13_S_contig17241.5116.1 ID=mRNA_Ecto-sp13_S_contig17241.5116.1|Name=mRNA_Ecto-sp13_S_contig17241.5116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17241:3..317- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTGCGCGGGGGGCTGTTGCTGCTGGTTGCGGATTCCCCACAACGCGC
TCTGATGTACAAGGGAAAACACCCGAACAAGTCCACCAGATTCCCCTGTA
TCTATTGCATGGTAGAGCGAACGCAAGATACGGAAGGGGAAGAGGGCATG
GATCCAGGGGGGCCGCTTGGGGATCAGCTGTACGACACAGAATCAAACGC
CCGCACCAGGGGGGGGGTGCTTGCAGCCAGGCGACGACTGTTGGAACTAA
AGGACCAAGCGTCCGCCCAAGCCAAGGAATCGACTGCGCTTGGAGTCGTT
GCTCCAGCAAGAGCC
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