mRNA_Ecto-sp13_S_contig17228.5112.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17228.5112.1
Unique NamemRNA_Ecto-sp13_S_contig17228.5112.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17228.5112.1 vs. uniprot
Match: A0A6H5JR87_9PHAE (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR87_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 6.030e-39
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 MTTSTPLFEEVASRDVLGFSFGGRSYADQLTDAIAKTKVVCGVKVERKSIGKAGNTTEVVYVQHDFGFL 207
            MTTSTPLFEEVASRDVLGFSFGGRSYADQLTDAIAKTKVVCGVKVERKSIGK G TTEVVYVQHDFGFL
Sbjct:    1 MTTSTPLFEEVASRDVLGFSFGGRSYADQLTDAIAKTKVVCGVKVERKSIGKEGYTTEVVYVQHDFGFL 69
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BLAST of mRNA_Ecto-sp13_S_contig17228.5112.1 vs. uniprot
Match: W7TIN5_9STRA (Pyruvate carboxylase subunit b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIN5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.190e-16
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   16 PLFEEVASRDVLGFSFGGRSYADQLTDAIAKTKVVCGVKVERKSIGKAGNTTEVVYVQHDFGFL 207
            PLF EV S DVLGFSFGGR Y +QL DAIAKTK  C V V  +++    +T  VV+V H+F FL
Sbjct:    7 PLFTEVCSTDVLGFSFGGRGYKEQLEDAIAKTKEFCAVDVSLRTLKHKDSTISVVWVTHNFAFL 70
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BLAST of mRNA_Ecto-sp13_S_contig17228.5112.1 vs. uniprot
Match: D8LM14_ECTSI (Acetyl-CoA carboxytransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM14_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-16
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:    3 DDLNTPVRRGCLSRCAGLQLRGALLCRPAHGRDRQDEGGVRGK 131
            DDL+ PVRRGCLSRCAGLQLRGA LCRPAHGRDRQDEGG  G+
Sbjct:   64 DDLDAPVRRGCLSRCAGLQLRGAFLCRPAHGRDRQDEGGSLGQ 106
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BLAST of mRNA_Ecto-sp13_S_contig17228.5112.1 vs. uniprot
Match: F0XWB2_AURAN (Acetyl-CoA carboxytransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWB2_AURAN)

HSP 1 Score: 73.9 bits (180), Expect = 8.880e-14
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   19 LFEEVASRDVLGFSFGGRSYADQLTDAIAKTKVVCGVKVERKSIGKAGNTTEVVYVQHDFGFL 207
            LF EV S+D LGF FGGRSY DQL DA+ KTK  C V+V  +S+  +G    VV+VQHDF FL
Sbjct:   43 LFGEVCSKDFLGFGFGGRSYGDQLLDAVKKTKQHCAVRVRVRSLAPSG--VAVVWVQHDFAFL 103
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BLAST of mRNA_Ecto-sp13_S_contig17228.5112.1 vs. uniprot
Match: A0A7S3NKJ5_9STRA (Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKJ5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.750e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   19 LFEEVASRDVLGFSFGGRSYADQLTDAIAKTKVVCGVKVERKSIGKAGNTTEVVYVQHDFGFL 207
            +FEEV S + L FSFG RSY++Q+ DA+ KTK  C V V  K +  +  +  VV+VQHDFGFL
Sbjct:   11 MFEEVCSTNFLEFSFGNRSYSEQIADAVRKTKNHCAVTVYLKELKHSNKSLRVVWVQHDFGFL 73
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BLAST of mRNA_Ecto-sp13_S_contig17228.5112.1 vs. uniprot
Match: A0A4D9CVF6_9STRA (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.510e-7
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   16 PLFEEVASRDVLGFSFGGRSYADQLTDAIAKTK 114
            PLF EV S DVLGFSFGGR Y +QL DAIAKTK
Sbjct:    7 PLFTEVCSTDVLGFSFGGRGYKEQLEDAIAKTK 39
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17228.5112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JR87_9PHAE6.030e-3997.10CoA carboxyltransferase N-terminal domain-containi... [more]
W7TIN5_9STRA1.190e-1657.81Pyruvate carboxylase subunit b n=1 Tax=Nannochloro... [more]
D8LM14_ECTSI3.100e-1686.05Acetyl-CoA carboxytransferase n=1 Tax=Ectocarpus s... [more]
F0XWB2_AURAN8.880e-1458.73Acetyl-CoA carboxytransferase n=1 Tax=Aureococcus ... [more]
A0A7S3NKJ5_9STRA2.750e-1252.38Acetyl-coenzyme A carboxylase carboxyl transferase... [more]
A0A4D9CVF6_9STRA3.510e-778.79CoA carboxyltransferase N-terminal domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17228contigEcto-sp13_S_contig17228:933..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score73.6
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog44056.XP_009032607.1
Model size207
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.pyruvate carboxylase activity
EggNOG OGsCOG1038@1,COG4799@1,KOG0369@2759,KOG0540@2759
Cds size207
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.3628752-CDS-Ecto-sp13_S_contig17228:932..11391681462900.3628752-CDS-Ecto-sp13_S_contig17228:932..1139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17228 933..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17228.5112.1prot_Ecto-sp13_S_contig17228.5112.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17228 933..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17228.5112.1

>prot_Ecto-sp13_S_contig17228.5112.1 ID=prot_Ecto-sp13_S_contig17228.5112.1|Name=mRNA_Ecto-sp13_S_contig17228.5112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MTTSTPLFEEVASRDVLGFSFGGRSYADQLTDAIAKTKVVCGVKVERKSI
GKAGNTTEVVYVQHDFGFL
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mRNA from alignment at Ecto-sp13_S_contig17228:933..1139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17228.5112.1 ID=mRNA_Ecto-sp13_S_contig17228.5112.1|Name=mRNA_Ecto-sp13_S_contig17228.5112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17228:933..1139+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGACCTCAACACCCCTGTTCGAAGAGGTTGCCTCTCGAGATGTGCT
GGGCTTCAGCTTCGGGGGGCGCTCCTATGCAGACCAGCTCACGGACGCGA
TCGCCAAGACGAAGGTGGTGTGCGGGGTAAAGGTCGAGAGGAAATCCATC
GGCAAGGCAGGGAACACGACTGAGGTCGTGTACGTGCAGCACGACTTCGG
CTTCCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17228:933..1139+

>mRNA_Ecto-sp13_S_contig17228.5112.1 ID=mRNA_Ecto-sp13_S_contig17228.5112.1|Name=mRNA_Ecto-sp13_S_contig17228.5112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17228:933..1139+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGACCTCAACACCCCTGTTCGAAGAGGTTGCCTCTCGAGATGTGCT
GGGCTTCAGCTTCGGGGGGCGCTCCTATGCAGACCAGCTCACGGACGCGA
TCGCCAAGACGAAGGTGGTGTGCGGGGTAAAGGTCGAGAGGAAATCCATC
GGCAAGGCAGGGAACACGACTGAGGTCGTGTACGTGCAGCACGACTTCGG
CTTCCTA
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