mRNA_Ecto-sp13_S_contig17226.5111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17226.5111.1
Unique NamemRNA_Ecto-sp13_S_contig17226.5111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: D7FP73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP73_ECTSI)

HSP 1 Score: 613 bits (1581), Expect = 2.140e-220
Identity = 294/311 (94.53%), Postives = 302/311 (97.11%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFSLVGTGPKEEELLVTTADSNRTKRVSRVWARLRALGPGWKGLTTKLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPRIPEECEAPVR 933
            RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWG+DNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGE ADTAPEVRL SHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAV+GKSAIYSQPDNAAFDMTVQSAHRLNQEIQT+PHTFYFSLVGTGPKEE+LLVT  D+ +TK V RVWARL +LGPGWKGL TKLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPR+PEECEAPVR
Sbjct:   61 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGKDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGERADTAPEVRLVSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVVGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTNPHTFYFSLVGTGPKEEDLLVTPTDTGQTKWVFRVWARLLSLGPGWKGLKTKLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPRVPEECEAPVR 371          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: A0A4D9CZC8_9STRA (Quinolinate synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZC8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 9.250e-47
Identity = 101/223 (45.29%), Postives = 130/223 (58.30%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRF--FDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFSLVGT----GPKEEE 651
            R C+IFY+LKGG V YGQ H+  +GHA  G     GL   W   +P+H++GHS+GG T R+L H L    F+  G   TSA W+RSV+T N+P NG+ LVY LG        V   S GH L +  H L   DW  L+R    D  L ++ LSWRR  W+ GL+ +  AVLG S + +  DNAA+DMT+ +A   N+   T PH FYFS VGT    G +EEE
Sbjct:  625 RVCQIFYQLKGGRVHYGQAHAARYGHAAVGAENHRGLCPEWDAAHPIHLVGHSFGGLTVRLLVHYLDKQAFA--GHPSTSATWIRSVSTLNAPHNGTHLVYGLGADPACPRLVHWGSPGHALGMLAHVLAFWDWEGLRRGCGLDFALEYWGLSWRRGIWK-GLRRLGAAVLGLSNVCTTADNAAYDMTIHAALHYNRITCTYPHVFYFSFVGTRARHGEEEEE 844          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: A0A1Y1IA70_KLENI (Triacylglycerol Lipase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IA70_KLENI)

HSP 1 Score: 167 bits (424), Expect = 1.770e-44
Identity = 106/305 (34.75%), Postives = 156/305 (51.15%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFSLVGTGPKEEELLVTTADSNRTKRVSRVWARLRALGPGWKGLTTKLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPRIPEE 915
            RACE+FY++KGGTV YG+ HSRA GH  +G+T+D G +  W E++PVH +GHS G QT R+L  +LA G F   G  +T+A WV SVT+ +  LNG+  VY  G        +R  S   +L++ +     LD   LK+F+D    HFELSW + G    +  +  A+LG+   ++  D    D+++QS+ RLN+ + T P TFYFS      + +E+      +        VW R+  +G     L  +L Y   +    W+                       +DG L  ++Q  PRIPEE
Sbjct:  147 RACELFYQIKGGTVDYGEAHSRACGHKRYGKTWD-GFYPNWDENHPVHFVGHSSGAQTIRLLHTMLAEGEFE--GHPKTNAKWVLSVTSLSGSLNGTTRVYLDGLSFSDGTTLRHPSLLSVLAIGVVIFHWLDIDFLKKFYDFGFDHFELSWHQAG----VTGLLEALLGRRGPFAGTDWILPDLSIQSSARLNKRLATYPDTFYFSYATA--QTQEVFGRHVPAGSQVHPLFVW-RVLQIGSWTHPLNVRLPYEGYRDEDWWE-----------------------NDGALNTFSQMFPRIPEE 418          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: A0A7S0UEC0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UEC0_HEMAN)

HSP 1 Score: 162 bits (409), Expect = 2.610e-44
Identity = 90/213 (42.25%), Postives = 128/213 (60.09%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQG-LKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPH-TFYFSLVGT 633
            RACE+F ++KGG V YG+EHS   GHA +G  Y+ GL+  W  ++P+H++GHS GG T R+LQHLL  G F   G   TSA WV S++T N+PLNGS + Y+LG  +D + +VR  S G LL   +H    L  PLL+  +D  +  ++L W    W  G L  +A A++G+S +    DNAA+D +V +  + N E+      T+Y S  GT
Sbjct:   67 RACEVFAQIKGGVVDYGREHSERCGHARYGRCYE-GLYREWDAEHPIHLVGHSLGGTTGRMLQHLLHIGHFE--GHADTSADWVASLSTINAPLNGSPVAYALGLQSDGSSDVRALSCGWLLGRVVHVAGFLGVPLLR--YDIGMDQWQLGW----WHGGSLVRLASALVGRSPMVEGGDNAAYDCSVHAMRKWNAEMGPGHKGTYYMSFAGT 270          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: L1IA24_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IA24_GUITC)

HSP 1 Score: 158 bits (400), Expect = 8.360e-44
Identity = 86/212 (40.57%), Postives = 127/212 (59.91%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHT-FYFSLVGT 633
            RACE+FY++KGG V YG+EHS+  GHA +G  Y  GLFS W  + P+H++GHS GG TAR LQHLL    F  PG + T A+W+ S+++ ++PLNG+L  Y+LGE  D  P VR  S G +L   +H L +    +L   ++  L  ++LS +  G    +K +   +L  S +  + DNAA+D T+ +  + N+ +       +YFS VGT
Sbjct:   15 RACEVFYQIKGGKVDYGEEHSQRFGHARYGRLYP-GLFSEWSSERPIHMLGHSLGGATARYLQHLLEARAF--PG-HATDASWILSLSSLSAPLNGTLTTYALGEEEDAPPRVRRLSPGSILGSLVHVLAMCGGRMLG--YELGLEQWKLSMKDVGAGAAIKKLVRCLLVHSDLVEEEDNAAYDTTIHAMKKHNESMGGGHGCCYYFSFVGT 220          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: F2EFR0_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2EFR0_HORVV)

HSP 1 Score: 153 bits (387), Expect = 1.750e-39
Identity = 103/306 (33.66%), Postives = 147/306 (48.04%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFSLVGTGPKEEELLVTTADSNRTKRVSRVWARLRALGPGWKGLTTKLVYSALKRLHSWQVGAHASAIESRL-GVAADSWSSAGDDGVLEGYTQSHPRIPEE 915
            RA E+FY LKGG V YG+EHSR +GH+  G  YD G +  W E++P H +GHS G Q  R+LQ +L    F   G   TS  WV SVT+ +  LNGS   Y  G   +    +R      +  V       LD P L+R++D    HF +S R      G+  ++  + G S  ++  D    D+T+QSA R+N +++T PHTFYFS                 + RT ++  V        P        LV+  + +L  W+   H +A E    G   + W    +DG L  ++ +HPRIP E
Sbjct:  112 RARELFYYLKGGRVDYGEEHSRTYGHSRFGRAYDRGHYPMWDEEHPAHFVGHSAGAQVIRLLQQMLHDKAFD--GYENTSENWVLSVTSLSGVLNGSTTAYLGGIRPEDGRSIRFICLAQVYRVGTIIYHWLDIPWLRRYYDFGFDHFGMSRRA----VGVSGLSSLLAGASGPFATGDWILPDLTIQSAARMNADVRTFPHTFYFSYA---------------TRRTTKLCGVTV------PSGVMRIHPLVFIHVMQLCRWR---HFAAAEPPCKGYRDEDWED--NDGALNTFSMTHPRIPVE 385          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: UPI00053C74CF (uncharacterized protein LOC104809584 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C74CF)

HSP 1 Score: 152 bits (383), Expect = 7.660e-39
Identity = 99/305 (32.46%), Postives = 148/305 (48.52%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFSLVGTGPKEEELLVTTADSNRTKRVSRVWARLRALGPGWKGLTTKLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPRIPEE 915
            RA E+F+ LKGG V +G+EHSRA GHA  G  Y+ G +  W ED+P+H +GHS G Q  RVLQ +LA   F   G   T   WV SVT+ +   NG+   Y  G   +    ++      L  V +   + LD P LK +++    HF LSW++ G+R GL D    +LG +  ++  D    D+T+Q + RLN  + T P+TFYFS                 + RT+R+  +      LG         +++  + ++  W+     S      G   + W    +DG L   + +HPR+P E
Sbjct:  115 RARELFFYLKGGQVDFGEEHSRACGHARFGRVYEQGQYPEWDEDHPIHFVGHSAGAQVVRVLQQMLADKAFE--GYENTDENWVLSVTSLSGAFNGTTRTYLDGMRPEDGMSMKPICLLQLCRVGVIMYDWLDIPWLKSYYNFGFDHFNLSWKKTGFR-GLVDC---LLGNAGPFASNDWILPDLTIQGSTRLNSYLHTFPNTFYFSYA---------------TKRTRRMMGITVPSGVLG------IHPMLFLRVFQMSRWKFPQDVS--PPYKGYRDEEWQE--NDGALNTISMTHPRLPVE 388          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: A0A6A2ZLZ1_HIBSY (Tryptophan aminotransferase 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZLZ1_HIBSY)

HSP 1 Score: 151 bits (381), Expect = 1.370e-38
Identity = 83/208 (39.90%), Postives = 120/208 (57.69%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRG-WRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFS 621
            RA E+FY LKGG+V YG+EHS+A GH+  G  Y+ G +  W ED+P+H++GHS G Q ARVLQ +LA   F       TS  WV S+T  +   NG+   Y  G + +    +R         + +   + LD PLLK +++    HF LSWR+ G W  GL D    +LG +  ++  D    D+T+Q + +LN+++QT P+TFYFS
Sbjct:  115 RARELFYYLKGGSVDYGEEHSKACGHSQFGRFYEQGHYPEWDEDHPIHIVGHSAGAQVARVLQQMLADKAFKD--HENTSENWVLSITALSGAFNGTTRTYLDGMLPEDGRNLRRICVMQFCRIGVVIYDWLDIPLLKTYYNFGFDHFNLSWRKVGLW--GLVDC---LLGNAGPWATGDWILPDLTIQGSMKLNRDLQTFPNTFYFS 315          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: A0A3B6ERN4_WHEAT (Uncharacterized protein n=4 Tax=Triticum TaxID=4564 RepID=A0A3B6ERN4_WHEAT)

HSP 1 Score: 149 bits (376), Expect = 6.700e-38
Identity = 100/305 (32.79%), Postives = 143/305 (46.89%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFSLVGTGPKEEELLVTTADSNRTKRVSRVWARLRALGPGWKGLTTKLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPRIPEE 915
            RA E+FY LKGG V YG+EHSRA+GHA  G  YD G +  W E++P H +GHS G Q  R+LQ +L    F   G   TS  WV SVT+ +  LNGS   Y  G   +    +       +  V       LD P LKR++D    HF +SW       G+  +   + G S  ++  D    D+T+Q+A R+N +++T P+TFYFS                 + RT +   V        P        LV+  + +L  W+   H ++         + W    +DG L  ++ +HPRIP E
Sbjct:  113 RARELFYYLKGGRVDYGEEHSRAYGHARFGRAYDRGHYPMWDEEHPAHFVGHSAGAQVIRLLQQMLHDKAFD--GYENTSENWVLSVTSLSGVLNGSTTAYLGGIRPEDDRSMSFVCLAQIYRVGTTIYHWLDIPWLKRYYDFGFDHFGMSWHT----VGVSGLPSLLAGTSGPFATGDWILPDLTIQNATRMNADVRTFPNTFYFSYA---------------TRRTTKFCGVTV------PSGVMHIHPLVFIHVMQLCRWR---HFASEPPCKDYRDEDWED--NDGALNTFSMTHPRIPVE 385          
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Match: A0A7N2LA18_QUELO (Uncharacterized protein n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2LA18_QUELO)

HSP 1 Score: 147 bits (370), Expect = 5.280e-37
Identity = 96/305 (31.48%), Postives = 146/305 (47.87%), Query Frame = 1
Query:    1 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVIGHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLVYSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFELSWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTDPHTFYFSLVGTGPKEEELLVTTADSNRTKRVSRVWARLRALGPGWKGLTTKLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPRIPEE 915
            RA E+FY LKGG V YG+EHS+A GH+  G  Y+ G +  W ED+P+H +GHS G Q  R+LQ +L    F   G   TS  WV S+T  +   NG+   Y  G   +    ++      L  + +   +  D P LK +++    HF +SWR+ G+R GL D    +LG S  +S  D    D+++Q A +LN  + T P+T+YFS                 + RT+++  +      LG         L++  + ++  W+     S      G   + W   G+DG L     +HPR+P E
Sbjct:  117 RARELFYYLKGGQVDYGEEHSKACGHSQFGRVYEQGNYPEWDEDHPIHFVGHSAGAQVVRLLQQMLTDKAFK--GYENTSEKWVLSITALSGAFNGTTRTYLDGIQPEDGRTMKPICLLQLCRIGVIIYDWFDVPWLKAYYNFGFDHFNMSWRKIGFR-GLVD---GLLGNSGPFSSGDWILPDLSIQGAMQLNCHLNTFPNTYYFSYA---------------TKRTRKILGITVPSSILG------IHPLLFIRVLQMSQWRHPPDVS--PPYKGYRDEDWQ--GNDGALNTAYMTHPRLPIE 390          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17226.5111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP73_ECTSI2.140e-22094.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CZC8_9STRA9.250e-4745.29Quinolinate synthase n=1 Tax=Nannochloropsis salin... [more]
A0A1Y1IA70_KLENI1.770e-4434.75Triacylglycerol Lipase n=1 Tax=Klebsormidium niten... [more]
A0A7S0UEC0_HEMAN2.610e-4442.25Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1IA24_GUITC8.360e-4440.57Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
F2EFR0_HORVV1.750e-3933.66Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
UPI00053C74CF7.660e-3932.46uncharacterized protein LOC104809584 n=1 Tax=Taren... [more]
A0A6A2ZLZ1_HIBSY1.370e-3839.90Tryptophan aminotransferase 1 n=1 Tax=Hibiscus syr... [more]
A0A3B6ERN4_WHEAT6.700e-3832.79Uncharacterized protein n=4 Tax=Triticum TaxID=456... [more]
A0A7N2LA18_QUELO5.280e-3731.48Uncharacterized protein n=5 Tax=Fagaceae TaxID=350... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17226contigEcto-sp13_S_contig17226:403..3614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score617.8
Seed ortholog evalue2.7e-174
Seed eggNOG ortholog2880.D7FP73
Model size936
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGs2QPNZ@2759,COG1075@1
Cds size936
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17226.5111.1prot_Ecto-sp13_S_contig17226.5111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17226 403..3614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.2806013-CDS-Ecto-sp13_S_contig17226:402..5411681462900.2806013-CDS-Ecto-sp13_S_contig17226:402..541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17226 403..541 -
1681462900.2902582-CDS-Ecto-sp13_S_contig17226:1174..13861681462900.2902582-CDS-Ecto-sp13_S_contig17226:1174..1386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17226 1175..1386 -
1681462900.2988746-CDS-Ecto-sp13_S_contig17226:1648..18021681462900.2988746-CDS-Ecto-sp13_S_contig17226:1648..1802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17226 1649..1802 -
1681462900.3100462-CDS-Ecto-sp13_S_contig17226:2269..24461681462900.3100462-CDS-Ecto-sp13_S_contig17226:2269..2446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17226 2270..2446 -
1681462900.320375-CDS-Ecto-sp13_S_contig17226:2976..30251681462900.320375-CDS-Ecto-sp13_S_contig17226:2976..3025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17226 2977..3025 -
1681462900.3304565-CDS-Ecto-sp13_S_contig17226:3409..36141681462900.3304565-CDS-Ecto-sp13_S_contig17226:3409..3614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17226 3410..3614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17226.5111.1

>prot_Ecto-sp13_S_contig17226.5111.1 ID=prot_Ecto-sp13_S_contig17226.5111.1|Name=mRNA_Ecto-sp13_S_contig17226.5111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp
RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGEDNPVHVI
GHSYGGQTARVLQHLLATGFFSKPGEYQTSAAWVRSVTTCNSPLNGSLLV
YSLGEMADTAPEVRLTSHGHLLSVAIHALELLDWPLLKRFFDPRLSHFEL
SWRRRGWRQGLKDVALAVLGKSAIYSQPDNAAFDMTVQSAHRLNQEIQTD
PHTFYFSLVGTGPKEEELLVTTADSNRTKRVSRVWARLRALGPGWKGLTT
KLVYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHP
RIPEECEAPVR*
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mRNA from alignment at Ecto-sp13_S_contig17226:403..3614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17226.5111.1 ID=mRNA_Ecto-sp13_S_contig17226.5111.1|Name=mRNA_Ecto-sp13_S_contig17226.5111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17226:403..3614- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCGTGCGAGATTTTCTACGAGCTGAAAGGTGGCACTGTGTGCTACGG TCAGGAGCACTCCCGGGCTCACGGGCACGCCTGCCACGGTGAGACGTACG ACGTCGGGTTGTTCTCCGCCTGGGGGGAAGACAACCCTGTCCACGTGATC GGGCACAGCTACGGCGGGCAGACGGCGAGGGTCTTGCAGCACCTACTGGC GACGGGTGCGAGCGCGTGTCTCGGTCTTTGGATCGATCTATCGGTCGATC GGTCGCGGTAACCCGCTGGCCGATGAAAATACTAGGTCAATGTCATTTGC GCATCGGGATGAAAGCAAACGTCAGCACGAGTTCGAAGTGTGTTCTAATA TGCACTTCTTGCGGAAAGGGGTTGACAAGCATTGCTACGTGGTGCATGAG GTTCCTGCATTCTATGATACCGTCTTGACCTATGAGCGTTACCCAAACCT CTCCCACCCGCGGGATATACCACCCTACTAAGCCGCAAGACTACTGTGCC CTACGTAGTCCTCACGTAGACATGTCATACTTTGCCGATTTTCTTGTCGA TCCCCACCCCCCACCCCCCTCGCTGGCCCCCGTCATCAGGGTTCTTCTCC AAGCCTGGCGAGTACCAAACGAGTGCGGCGTGGGTAAGGTGCGAGGTCTT TCCAGTTCAGGCTTCGAGAATGTCGGCTACCACTGCTATCGTCAGTCGGT CGTGTGCACGCTGGGCGAACATGGATTGTATTGGCCACAAGCTAGTCCAT AACGCCCACGACATACTGTATGTAGAAGGAGTGAAACGGCGTAACCGGAC GTAAAGGCCGTTTTCCTGGTGCGCGACATGTCGACCGACGACCACACGCA CGAACAGCTGTTGCTTTGAAGAATTGCTGTTTGTATTTGTATTGCATGAT CACGCAGTCAGAGCACCTGCGCAGAAGTGCTGCGGATGCAATGTAGCATG AGCTTTCCGACGATACTATTTTGTTGCGCCCTCCTTCCGAACGGGTGTCC TCAGCAGCCGGCCCAACGACTCTACTCAACGGCTCTAGTCACTGTCCGAC CAAGAAAATATTTCGCCTGCCCGAATCATAAACAGACATACTCCTCCGTC ACCTGGCTCTCGTATGTACTACGCCGGCATCCTCTGCCTGCGGCCCGCCT CTATTTTTTACCACTCAGGAGCGTGACCACGTGCAACTCGCCCTTGAACG GCTCCTTGCTGGTATACAGCTTGGGCGAGATGGCCGACACTGCCCCGGAG GTACGCCTCACCTCCCACGGCCACCTGCTGTCGGTGGCTATCCACGCGCT GGAGCTCCTGGACTGGCCGCTTCTGAAACGATTCTTCGACCCAAGGTAGA GATACGTAAGACGGAGAAACAGAATGCGGGCGTTTCTGTTGCTTCCCAGA GAACGTAGGTGCGTTTACTGCTCCCCAGAGGTGGGAGACAGGAACGATTT TTGTGATGTGAAGACAAACAACAGAGGGCCACCAGCGCACCGTGTGTTGC TGTGGGCCGACTAAGTTTAGCGTTGTGTGCTTGGCGTCGTCGATATAACC TTGTGTGGGCACACACGGGTACGCATGCGACGAAAATTCCGGACAAACGC TGCTGAAGCCTCCCCCCTCCCCCCCCCGCGGGAGAAATACCGAAAAGAAA GAAATGAAACAACGGCAAACCATTTCTGTGAGCGTCTCGCTCACCTTCGG ACGTTCGCGAGCCCACTCTGGAGGCCACCCCAAGAGTTATTTGTTTCAAG CTCCTCTTTCCGTTTTTTGTTTTCGGGGTGCTTTTCTCGCTGTTGCTCTC GTCCTGTCTCAGGCTGTCGCACTTCGAGTTGTCGTGGCGGCGTCGCGGGT GGCGCCAGGGGCTCAAGGACGTAGCTCTGGCTGTGTTGGGCAAGAGCGCG ATATACTCTCAGCCGGACAACGCGGCCTTTGACATGACGGTGCAGTCGGC GCATCGGTTAAACCAGGTGGGTCTGGTTGTCAAGAGAAGCAGGTTTAGCC GTTGGTTGTAACATGTTGAGTGCGTATGCTAGGGCGTCGTCAGAAATTTG AACGCAGCTGTCAACTCGACGCGAACATTTTTGCGATGCGGACGCGCAAC GCGGTGGCCGACAAACCACCATCCCTTCCTCTTCTTCTTTGATATGCCCC GCCACCCTCATTTGCCAACTCATCACCCCCTTCCTCTGATGTCTGATGTG CTTTACCGTCCCCGCTTGCCGTCGACAGGAGATTCAAACCGACCCCCACA CCTTTTATTTCAGTTTGGTGGGTACAGGACCCAAGGAAGAGGAGCTGTTG GTCACGACTGCGGATAGTAACCGGACAAAGCGGGTGTCCAGGGTTTGGGC GCGGCTGCGGGCGCTTGGTCCGGGGTGGAAGGGGTTGACGACCAAGCTTG TGTATTCGGCGCTGAAACGGCTGCACTCGTGGCAAGTTGGGTGAGTCCAA GCGGTTTCGCTACCGACGGAGTGAGTCTAAAGCGTGATGGCTACCGGCCG AGTAGGGGCGAGACACGGCCAAGGGCGGGCGTTGGTTGCCCCACTGCTTC GCAGCTGATGTTTGCTTGTTAGTGATCCTGAAGCATCAGAGGCGTGCATG CTGCAAAGGTCAAGAGCATTCTTAGCATCCGGCATCCTCTCCCGCGGGCT TTCGGCCTCCTCCCCCCCCCTGCTCCGAGTTCTACATATGCAAAACACGC GTACTATAGTTTGGCTGTTTGGCGGGACGGCGATTTTCACTGGTGGACGT TTATCCGGTGTTGCGTGTTGTTAAAGTAGTGTCTTTGTCCAGTATAGCGT GTTCACGTGTGGTGTCTGGTACTGACATTGCTTGGGCCTACGTCTTCTTG TGTTCGTGCACCCAACCCTACCAACCGCTTGATGACCGCTTCGAATACTT GCACAGCTTGCCAAGTCCCGGTATTCGTTTGTCGCTGTCAGCATGCATAC GTCGTCCTTCTTTCGCTCTCGCCCGAATGAAACCGCCTTCACCGCACCCT TCTCTGCCTTAAAATGTGCGGAAAATGCCAACGGCACCACTTGTTTCCAA ACCTACATCTCCCGTGTGCATAGGGCCCACGCGAGTGCCATAGAGAGCCG CCTCGGAGTGGCCGCGGACTCGTGGAGTTCGGCGGGAGACGATGGCGTTT TGGAGGGGTATACTCAAAGCCATCCCCGTATCCCCGAGGAGTGCGAAGCG CCTGTAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17226:403..3614-

>mRNA_Ecto-sp13_S_contig17226.5111.1 ID=mRNA_Ecto-sp13_S_contig17226.5111.1|Name=mRNA_Ecto-sp13_S_contig17226.5111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17226:403..3614- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCGTGCGAGATTTTCTACGAGCTGAAAGGTGGCACTGTGTGCTACGG
TCAGGAGCACTCCCGGGCTCACGGGCACGCCTGCCACGGTGAGACGTACG
ACGTCGGGTTGTTCTCCGCCTGGGGGGAAGACAACCCTGTCCACGTGATC
GGGCACAGCTACGGCGGGCAGACGGCGAGGGTCTTGCAGCACCTACTGGC
GACGGGGTTCTTCTCCAAGCCTGGCGAGTACCAAACGAGTGCGGCGTGGG
TAAGGAGCGTGACCACGTGCAACTCGCCCTTGAACGGCTCCTTGCTGGTA
TACAGCTTGGGCGAGATGGCCGACACTGCCCCGGAGGTACGCCTCACCTC
CCACGGCCACCTGCTGTCGGTGGCTATCCACGCGCTGGAGCTCCTGGACT
GGCCGCTTCTGAAACGATTCTTCGACCCAAGGCTGTCGCACTTCGAGTTG
TCGTGGCGGCGTCGCGGGTGGCGCCAGGGGCTCAAGGACGTAGCTCTGGC
TGTGTTGGGCAAGAGCGCGATATACTCTCAGCCGGACAACGCGGCCTTTG
ACATGACGGTGCAGTCGGCGCATCGGTTAAACCAGGAGATTCAAACCGAC
CCCCACACCTTTTATTTCAGTTTGGTGGGTACAGGACCCAAGGAAGAGGA
GCTGTTGGTCACGACTGCGGATAGTAACCGGACAAAGCGGGTGTCCAGGG
TTTGGGCGCGGCTGCGGGCGCTTGGTCCGGGGTGGAAGGGGTTGACGACC
AAGCTTGTGTATTCGGCGCTGAAACGGCTGCACTCGTGGCAAGTTGGGGC
CCACGCGAGTGCCATAGAGAGCCGCCTCGGAGTGGCCGCGGACTCGTGGA
GTTCGGCGGGAGACGATGGCGTTTTGGAGGGGTATACTCAAAGCCATCCC
CGTATCCCCGAGGAGTGCGAAGCGCCTGTAAGGTGA
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