prot_Ecto-sp13_S_contig17213.5108.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17213.5108.1
Unique Nameprot_Ecto-sp13_S_contig17213.5108.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length87
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17213.5108.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.350e-42
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0 
Query:    1 LVASPALPVAPYTVPSDGEGGVPLSQHEHGESLRVVSGIAVSFDGQTSRYLPLPPLLPSRSAAWHQPSSDCADHDGQANGGGSRVEP 87
            LVASPALPVAPYTVPS GEGGVPLSQ  HGESLRVVSGIA+SFDGQTSRYLPLPPLLPSRSAAWHQ  SDCADH  + +GGGSRVEP
Sbjct: 1511 LVASPALPVAPYTVPSGGEGGVPLSQRGHGESLRVVSGIAISFDGQTSRYLPLPPLLPSRSAAWHQSPSDCADHARRTSGGGSRVEP 1597
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BLAST of mRNA_Ecto-sp13_S_contig17213.5108.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.040e-8
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 
Query:    1 LVASPALPVAPYTVPSDGEGGVPLSQHEHGES 32
            LVASPALPVAPYTVPS GEGGVPLSQ  HGES
Sbjct: 1395 LVASPALPVAPYTVPSGGEGGVPLSQRGHGES 1426
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17213.5108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM15_ECTSI4.350e-4287.36DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L306_9PHAE1.040e-890.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17213contigEcto-sp13_S_contig17213:1882..2746 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17213.5108.1mRNA_Ecto-sp13_S_contig17213.5108.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17213 1882..2746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17213.5108.1 ID=prot_Ecto-sp13_S_contig17213.5108.1|Name=mRNA_Ecto-sp13_S_contig17213.5108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
LVASPALPVAPYTVPSDGEGGVPLSQHEHGESLRVVSGIAVSFDGQTSRY
LPLPPLLPSRSAAWHQPSSDCADHDGQANGGGSRVEP
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