prot_Ecto-sp13_S_contig172.5099.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig172.5099.1
Unique Nameprot_Ecto-sp13_S_contig172.5099.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length790
Homology
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BLAST of mRNA_Ecto-sp13_S_contig172.5099.1 vs. uniprot
Match: A0A6H5L4E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E6_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 4.960e-100
Identity = 155/171 (90.64%), Postives = 158/171 (92.40%), Query Frame = 0 
Query:  331 VDRSKDDGMGPPFVVGGRSSKPADDSRTSMDCIPQAMAVQEPNERRMRGTMGQGTAKKVTIVENLDSKDTPWVGKGGGVLVSVPRNAHWAFDWGFYHDIGPITVEEAAEVVKGSDDSICVVLQSVHCRPAGTTFLEPLTLDFAVRDGRVRWWDRAAVCEDVLREYQVLSKQ 501
            VDRSKDDG GP  VVGGRSSKPADD RTSMDCIPQA AVQEPNERRMRGTMGQ TAKKVTIVENLDSKDTPWVGKGGGVLVSVP NAHWAFDWGFYH IGPITV+EAAEVVKGSDDS+CVVLQ+VHCRPAGTTFLEPLTLDFAVRDG VRWWDRAAV EDVLREYQV   Q
Sbjct:  109 VDRSKDDGTGPALVVGGRSSKPADDLRTSMDCIPQATAVQEPNERRMRGTMGQRTAKKVTIVENLDSKDTPWVGKGGGVLVSVPMNAHWAFDWGFYHGIGPITVQEAAEVVKGSDDSVCVVLQAVHCRPAGTTFLEPLTLDFAVRDGHVRWWDRAAVYEDVLREYQVPKHQ 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig172.5099.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4E6_9PHAE4.960e-10090.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 146..170
e-value: 45.0
score: 7.9
coord: 194..217
e-value: 73.0
score: 6.2
coord: 266..290
e-value: 87.0
score: 5.6
coord: 98..122
e-value: 13.0
score: 12.3
coord: 218..242
e-value: 6.7
score: 14.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 80..167
e-value: 5.4E-23
score: 83.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 171..335
e-value: 2.3E-49
score: 170.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 100..159
e-value: 1.1E-6
score: 28.2
coord: 172..231
e-value: 3.0E-9
score: 36.5
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 89..240
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 163..261
coord: 89..240
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 233..312
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 233..312
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 163..261
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 89..322

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig172contigEcto-sp13_S_contig172:8498..26071 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig172.5099.1mRNA_Ecto-sp13_S_contig172.5099.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig172 7848..26098 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig172.5099.1 ID=prot_Ecto-sp13_S_contig172.5099.1|Name=mRNA_Ecto-sp13_S_contig172.5099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=790bp
MAQTLLQDVSDGPCGTACPPSRGRRARVESQRQLGHGLPHLAMARGHSHR
GPRREARSDVQQPPRYLRPNNRKPCTRKRQSDYFDIYAGIIPAQLGALHK
LTWLHLSNNQLSGPIPPQLGDVSALEALDLSFNKLDGHVPKELGALRNLE
QVLLQRNQLTGAIPAQLGALIKVTRLNLSNNRLSGHIPQQLGNMSALQIL
NLSRNNLDGSIPKELGDLSELRELWLGFNQLTGHIPKELGALSQLERLCL
LENQLTGPIPPELAKLAALERLDLTVNQLTGPIPKELGNLTALTTLELQN
NSLEGGVPAGVRNLGALITSDFGLIERQGSVDRSKDDGMGPPFVVGGRSS
KPADDSRTSMDCIPQAMAVQEPNERRMRGTMGQGTAKKVTIVENLDSKDT
PWVGKGGGVLVSVPRNAHWAFDWGFYHDIGPITVEEAAEVVKGSDDSICV
VLQSVHCRPAGTTFLEPLTLDFAVRDGRVRWWDRAAVCEDVLREYQVLSK
QSEDDPWQEMDVQDVSVVWDDQGSTCLRARIRHFTWFSVAKRTTSASGNV
VSRHWDKSVLVVNATNSVAHVTPMPISFTTSKEATKACSLTFSEAGISFE
AGRRTEQIMLPVNTSSEIIPAGGAAELFLSGGAREMKVIVCYLPDRNKAE
VSSSNQTVSPSSGTSPAPKTTSSPVIQTTATCTRQGTSMISQTSTAAAPS
SGGSPPLGAGPLVRVTSPTSEVAAPQSGGQGTSPRESEEMVYSMTKVLPG
RRRLTLLQASVNRKINIEQNARALETYAMMLADFGTAPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt