mRNA_Ecto-sp13_S_contig17139.5065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Match: D7G719_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI) HSP 1 Score: 661 bits (1706), Expect = 1.590e-216 Identity = 354/413 (85.71%), Postives = 362/413 (87.65%), Query Frame = 1
Query: 28 SRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDIEAFVLGKTGPTCKGSEETASRXXXXXXXXXXXXXXXXXXXXXXRRTPTPVLSQENFDVFIAAVVKLLPASLALAAPQTPPAGPPATSVQGGATGGGMTGSGVVYAEGGSRAMEPIPGVYCSPYEELECLGMVLECLVEACIESLYNGAWNSSAGTEELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLDLKGVRDRGRSAAVSGGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTAVRSAAFPEEKDGAADAPSALRPHRTVRDRIVKILPGAVLQSDQLSAAVDRARGVLQLPRKAGRDDDDDRMTEDKDEPSPGHKLPRPTSKTSSRRGASERLLSRFAA 1266
SRLRGQLQFP HMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVD+EAFVLGKTGPTCKGSE++ASR TPTPVLSQEN DVFI AVVKLLPASLALA+PQ P A PP TSVQGGAT +TGSGVVY E GSR PIPGV SPYEELECLGMVLECLVEACIESLYNGAWNSSAG EELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLD+ GVRDRG+SAAV GGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTAVRSA FPEEKDG ADAPSALRPHRTVRDRIVKILPGAVLQSDQLSAAVD ARGVLQLPRKAGRDDDDD +T DKDE SPGHKLPRPTSKTSSRRGASERLLSR AA
Sbjct: 1590 SRLRGQLQFPSHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDMEAFVLGKTGPTCKGSEDSASRQQSSSARHKATPSSSSWSSSPPTLTPTPVLSQENLDVFITAVVKLLPASLALASPQKPSAEPPGTSVQGGATRNDVTGSGVVYTESGSRVRGPIPGVSSSPYEELECLGMVLECLVEACIESLYNGAWNSSAGAEELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLDVNGVRDRGKSAAVPGGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTAVRSATFPEEKDGGADAPSALRPHRTVRDRIVKILPGAVLQSDQLSAAVDHARGVLQLPRKAGRDDDDDGITGDKDEASPGHKLPRPTSKTSSRRGASERLLSRCAA 2002
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Match: D7G721_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G721_ECTSI) HSP 1 Score: 478 bits (1231), Expect = 3.960e-156 Identity = 253/307 (82.41%), Postives = 260/307 (84.69%), Query Frame = 1
Query: 28 SRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDIEAFVLGKTGPTCKGSEETASRXXXXXXXXXXXXXXXXXXXXXXRRTPTPVLSQENFDVFIAAVVKLLPASLALAAPQTPPAGPPATSVQGGATGGGMTGSGVVYAEGGSRAMEPIPGVYCSPYEELECLGMVLECLVEACIESLYNGAWNSSAGTEELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLDLKGVRDRGRSAAVSGGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTA 948
SRLRGQLQFPPHMGNAS MLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVD+EAFVLGKTGPTCK SEE A R TPTPVLSQEN DVFIAAVVKLLP SLALA+PQ P GPPATSV+GGAT +TGSGV+YAE GSR PIPGV SPYEELECLGMVLECLVEACIESLYNGAWNSSAG EELTALGRLLRRCVLPVALCCSKTLR LESQLERALAWRCSQTLD+KGVRDRG+SA V GGSTEGVDFGAARLCRGLLEQCDLCADAVR LGTA
Sbjct: 781 SRLRGQLQFPPHMGNASVMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDMEAFVLGKTGPTCKSSEEPAFRRQSSSARHKATPSSSSWSSSPP--TPTPVLSQENLDVFIAAVVKLLPTSLALASPQKPLTGPPATSVRGGATRNDVTGSGVIYAESGSRVRGPIPGVSSSPYEELECLGMVLECLVEACIESLYNGAWNSSAGAEELTALGRLLRRCVLPVALCCSKTLRTLESQLERALAWRCSQTLDVKGVRDRGKSATVPGGSTEGVDFGAARLCRGLLEQCDLCADAVRMLGTA 1085
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Match: A0A6H5J6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6E0_9PHAE) HSP 1 Score: 308 bits (788), Expect = 2.630e-90 Identity = 167/208 (80.29%), Postives = 174/208 (83.65%), Query Frame = 1
Query: 25 RSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDIEAFVLGKTGPTCKGSEETASRXXXXXXXXXXXXXXXXXXXXXXRRTPTPVLSQENFDVFIAAVVKLLPASLALAAPQTPPAGPPATSVQGGATGGGMTGSGVVYAEGGSRAMEPIPGVYCSPYEELECLGMVLECLVEACIESLYNGAW 648
RSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHA LTHWALSGRMGRAWG+AAAVVD+EAFVLGKTGPTCKGSEE ASR XXXXX PVLSQENFDVF+A +VKLLPASLALAAPQTPPAGPPA+SVQGGATG +TG GV+ AEGGSRA IPGV SPYEELECLGMVLECLVEACIESLYNGAW
Sbjct: 1156 RSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHAFLTHWALSGRMGRAWGVAAAVVDVEAFVLGKTGPTCKGSEEPASRQQSSSARHKATPSSSSWXXXXXXXXXXPVLSQENFDVFMATLVKLLPASLALAAPQTPPAGPPASSVQGGATGSCVTGRGVICAEGGSRARGSIPGVSSSPYEELECLGMVLECLVEACIESLYNGAW 1363 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17139.5065.1 >prot_Ecto-sp13_S_contig17139.5065.1 ID=prot_Ecto-sp13_S_contig17139.5065.1|Name=mRNA_Ecto-sp13_S_contig17139.5065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=427bp MSGTHPFFRSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWALback to top mRNA from alignment at Ecto-sp13_S_contig17139:372..3753+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17139.5065.1 ID=mRNA_Ecto-sp13_S_contig17139.5065.1|Name=mRNA_Ecto-sp13_S_contig17139.5065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17139:372..3753+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17139:372..3753+ >mRNA_Ecto-sp13_S_contig17139.5065.1 ID=mRNA_Ecto-sp13_S_contig17139.5065.1|Name=mRNA_Ecto-sp13_S_contig17139.5065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17139:372..3753+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |