mRNA_Ecto-sp13_S_contig17131.5061.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI) HSP 1 Score: 180 bits (456), Expect = 7.950e-51 Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+VAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR
Sbjct: 646 KVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 733
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S3Y1X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1X9_HETAK) HSP 1 Score: 169 bits (427), Expect = 8.100e-49 Identity = 76/88 (86.36%), Postives = 86/88 (97.73%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+VAEGIDFDRHYGRAVVMFG+PFQYTLSHVLRARLEYLR+T Q+REGDFLTFDA+RQCAQC+GRV+RSKTDYG+++ ADSRYNRHDKR
Sbjct: 221 KVAEGIDFDRHYGRAVVMFGIPFQYTLSHVLRARLEYLRATHQVREGDFLTFDALRQCAQCVGRVLRSKTDYGVMLFADSRYNRHDKR 308
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A452XYU0_AEGTS (HELICc2 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XYU0_AEGTS) HSP 1 Score: 157 bits (398), Expect = 1.540e-47 Identity = 72/88 (81.82%), Postives = 81/88 (92.05%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+VAEGIDFDRHYGR V+MFGVPFQYTLS +LRARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG++I AD RY+RHDKR
Sbjct: 6 KVAEGIDFDRHYGRLVIMFGVPFQYTLSKILRARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR 93
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S3HGF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGF8_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.600e-46 Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+VAEGIDFDRHYGR V++FG+P+QYTLSHVLRARL Y+R + IR+ DFLTFDA+RQ AQC+GRVIRSKTDYG+VILADSRYNR DKR
Sbjct: 2 KVAEGIDFDRHYGRCVIIFGIPYQYTLSHVLRARLNYMRERYNIRDNDFLTFDALRQAAQCVGRVIRSKTDYGIVILADSRYNRQDKR 89
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA) HSP 1 Score: 167 bits (422), Expect = 4.950e-46 Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+VAEGIDFDRHYGR VVMFGVPFQYTLSHVLRARLEYLR+TFQIRE DFL FDA+RQ AQC+GRVIRSKTDYGL++LADSRYNRHDKR
Sbjct: 649 KVAEGIDFDRHYGRCVVMFGVPFQYTLSHVLRARLEYLRATFQIREADFLNFDALRQAAQCVGRVIRSKTDYGLMVLADSRYNRHDKR 736
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S1YWT9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1YWT9_TRICV) HSP 1 Score: 156 bits (395), Expect = 5.910e-46 Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+V+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL++ +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL+I ADSRYNRHDKR
Sbjct: 77 KVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKR 164
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S0FJQ4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ4_9STRA) HSP 1 Score: 157 bits (398), Expect = 6.320e-46 Identity = 72/88 (81.82%), Postives = 84/88 (95.45%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+V+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL++ +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL++LADSRYNRHDKR
Sbjct: 121 KVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMVLADSRYNRHDKR 208
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7J8P2L1_GOSRA (HELICc2 domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8P2L1_GOSRA) HSP 1 Score: 152 bits (385), Expect = 1.370e-45 Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+VAEGIDFDRHYGR V+M GVPFQYTLS +L ARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG++I AD RY+RHDKR
Sbjct: 33 KVAEGIDFDRHYGRLVIMIGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR 120
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S2M061_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M061_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.550e-45 Identity = 70/88 (79.55%), Postives = 82/88 (93.18%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+V+EGI+FDRHYGRAV+MFGVPFQYTLSH+LRARLEYL++ +QIRE DFL FDA+RQ +QC+GRVIRSK DYGL+I ADSRYNRHDKR
Sbjct: 83 KVSEGINFDRHYGRAVIMFGVPFQYTLSHILRARLEYLQTNYQIREQDFLNFDALRQASQCVGRVIRSKIDYGLMIFADSRYNRHDKR 170
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A2U1MI62_ARTAN (RAD3-like DNA-binding helicase protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MI62_ARTAN) HSP 1 Score: 155 bits (391), Expect = 3.890e-45 Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = 1
Query: 25 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 288
+VAEGIDFDRHYGR V+MFGVPFQYTLS +L ARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG++I AD RY RHDKR
Sbjct: 111 KVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYTRHDKR 198 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17131.5061.1 >prot_Ecto-sp13_S_contig17131.5061.1 ID=prot_Ecto-sp13_S_contig17131.5061.1|Name=mRNA_Ecto-sp13_S_contig17131.5061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp MSSSTISVQVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFback to top mRNA from alignment at Ecto-sp13_S_contig17131:2547..3114- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17131.5061.1 ID=mRNA_Ecto-sp13_S_contig17131.5061.1|Name=mRNA_Ecto-sp13_S_contig17131.5061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=568bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17131:2547..3114- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17131:2547..3114- >mRNA_Ecto-sp13_S_contig17131.5061.1 ID=mRNA_Ecto-sp13_S_contig17131.5061.1|Name=mRNA_Ecto-sp13_S_contig17131.5061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17131:2547..3114- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |