prot_Ecto-sp13_S_contig17131.5061.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17131.5061.1
Unique Nameprot_Ecto-sp13_S_contig17131.5061.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length97
Homology
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 7.950e-51
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +VAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR
Sbjct:  646 KVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 733          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S3Y1X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1X9_HETAK)

HSP 1 Score: 169 bits (427), Expect = 8.100e-49
Identity = 76/88 (86.36%), Postives = 86/88 (97.73%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +VAEGIDFDRHYGRAVVMFG+PFQYTLSHVLRARLEYLR+T Q+REGDFLTFDA+RQCAQC+GRV+RSKTDYG+++ ADSRYNRHDKR
Sbjct:  221 KVAEGIDFDRHYGRAVVMFGIPFQYTLSHVLRARLEYLRATHQVREGDFLTFDALRQCAQCVGRVLRSKTDYGVMLFADSRYNRHDKR 308          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A452XYU0_AEGTS (HELICc2 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XYU0_AEGTS)

HSP 1 Score: 157 bits (398), Expect = 1.540e-47
Identity = 72/88 (81.82%), Postives = 81/88 (92.05%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +VAEGIDFDRHYGR V+MFGVPFQYTLS +LRARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG++I AD RY+RHDKR
Sbjct:    6 KVAEGIDFDRHYGRLVIMFGVPFQYTLSKILRARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR 93          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S3HGF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGF8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.600e-46
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +VAEGIDFDRHYGR V++FG+P+QYTLSHVLRARL Y+R  + IR+ DFLTFDA+RQ AQC+GRVIRSKTDYG+VILADSRYNR DKR
Sbjct:    2 KVAEGIDFDRHYGRCVIIFGIPYQYTLSHVLRARLNYMRERYNIRDNDFLTFDALRQAAQCVGRVIRSKTDYGIVILADSRYNRQDKR 89          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 4.950e-46
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +VAEGIDFDRHYGR VVMFGVPFQYTLSHVLRARLEYLR+TFQIRE DFL FDA+RQ AQC+GRVIRSKTDYGL++LADSRYNRHDKR
Sbjct:  649 KVAEGIDFDRHYGRCVVMFGVPFQYTLSHVLRARLEYLRATFQIREADFLNFDALRQAAQCVGRVIRSKTDYGLMVLADSRYNRHDKR 736          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S1YWT9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1YWT9_TRICV)

HSP 1 Score: 156 bits (395), Expect = 5.910e-46
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +V+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL++ +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL+I ADSRYNRHDKR
Sbjct:   77 KVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKR 164          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S0FJQ4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.320e-46
Identity = 72/88 (81.82%), Postives = 84/88 (95.45%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +V+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL++ +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL++LADSRYNRHDKR
Sbjct:  121 KVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMVLADSRYNRHDKR 208          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7J8P2L1_GOSRA (HELICc2 domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8P2L1_GOSRA)

HSP 1 Score: 152 bits (385), Expect = 1.370e-45
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +VAEGIDFDRHYGR V+M GVPFQYTLS +L ARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG++I AD RY+RHDKR
Sbjct:   33 KVAEGIDFDRHYGRLVIMIGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR 120          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A7S2M061_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M061_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.550e-45
Identity = 70/88 (79.55%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +V+EGI+FDRHYGRAV+MFGVPFQYTLSH+LRARLEYL++ +QIRE DFL FDA+RQ +QC+GRVIRSK DYGL+I ADSRYNRHDKR
Sbjct:   83 KVSEGINFDRHYGRAVIMFGVPFQYTLSHILRARLEYLQTNYQIREQDFLNFDALRQASQCVGRVIRSKIDYGLMIFADSRYNRHDKR 170          
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Match: A0A2U1MI62_ARTAN (RAD3-like DNA-binding helicase protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MI62_ARTAN)

HSP 1 Score: 155 bits (391), Expect = 3.890e-45
Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = 0
Query:    9 QVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 96
            +VAEGIDFDRHYGR V+MFGVPFQYTLS +L ARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG++I AD RY RHDKR
Sbjct:  111 KVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYTRHDKR 198          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17131.5061.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI7.950e-5198.86General transcription and DNA repair factor IIH he... [more]
A0A7S3Y1X9_HETAK8.100e-4986.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A452XYU0_AEGTS1.540e-4781.82HELICc2 domain-containing protein n=1 Tax=Aegilops... [more]
A0A7S3HGF8_9STRA2.600e-4678.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A836CJZ4_9STRA4.950e-4688.64General transcription and DNA repair factor IIH he... [more]
A0A7S1YWT9_TRICV5.910e-4681.82Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A7S0FJQ4_9STRA6.320e-4681.82Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7J8P2L1_GOSRA1.370e-4579.55HELICc2 domain-containing protein n=1 Tax=Gossypiu... [more]
A0A7S2M061_9STRA2.550e-4579.55Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2U1MI62_ARTAN3.890e-4580.68RAD3-like DNA-binding helicase protein n=1 Tax=Art... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006555ATP-dependent helicase, C-terminalSMARTSM00491Cxpdneu3coord: 1..92
e-value: 3.7E-21
score: 86.3
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 6..93
e-value: 2.3E-24
score: 86.5
NoneNo IPR availableGENE3D3.40.50.300coord: 3..96
e-value: 1.4E-25
score: 91.9
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 9..96
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 9..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17131contigEcto-sp13_S_contig17131:2547..3114 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17131.5061.1mRNA_Ecto-sp13_S_contig17131.5061.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17131 2547..3114 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17131.5061.1 ID=prot_Ecto-sp13_S_contig17131.5061.1|Name=mRNA_Ecto-sp13_S_contig17131.5061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MSSSTISVQVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTF
QIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006555ATP-dep_Helicase_C
IPR001945RAD3/XPD