mRNA_Ecto-sp13_S_contig17127.5058.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17127.5058.1
Unique NamemRNA_Ecto-sp13_S_contig17127.5058.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17127.5058.1 vs. uniprot
Match: D7FX30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX30_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.290e-15
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:  208 MAPQLSASGPIPTSRGGQPAGRRLMFRVLKHRRFSTAIWSMLMLLSFIMV 357
            MAPQLSA GPIP S GGQPAG RLM  VL+HRRFSTA+WSMLMLLSFIMV
Sbjct:    1 MAPQLSAPGPIPASGGGQPAGGRLMLGVLEHRRFSTAMWSMLMLLSFIMV 50
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BLAST of mRNA_Ecto-sp13_S_contig17127.5058.1 vs. uniprot
Match: A0A6H5J9S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.750e-14
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:  208 MAPQLSASGPIPTSRGGQPAGRRLMFRVLKHRRFSTAIWSMLMLLSFIMV 357
            MAPQL ASGP P+S G QPAGR LM  VL+HRRFSTA+WSMLMLLSFIMV
Sbjct:    1 MAPQLPASGPFPSSGGSQPAGRLLMLGVLEHRRFSTAMWSMLMLLSFIMV 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17127.5058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX30_ECTSI2.290e-1584.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9S6_9PHAE2.750e-1480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17127contigEcto-sp13_S_contig17127:2634..2991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size359
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionProtein of unknown function DUF2306, membrane
Ec32 orthologEc-10_004080.1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462896.0847523-CDS-Ecto-sp13_S_contig17127:2633..29901681462896.0847523-CDS-Ecto-sp13_S_contig17127:2633..2990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17127 2634..2990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17127.5058.1prot_Ecto-sp13_S_contig17127.5058.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17127 2634..2990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17127.5058.1

>prot_Ecto-sp13_S_contig17127.5058.1 ID=prot_Ecto-sp13_S_contig17127.5058.1|Name=mRNA_Ecto-sp13_S_contig17127.5058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
PQSKRAGPRNSAAPLPPRPPPAEKTHRKHLRQTSWSHDNHKSRHTFTLYQ
RKTLTYFITRLPKVPIRGGMAPQLSASGPIPTSRGGQPAGRRLMFRVLKH
RRFSTAIWSMLMLLSFIMV
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mRNA from alignment at Ecto-sp13_S_contig17127:2634..2991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17127.5058.1 ID=mRNA_Ecto-sp13_S_contig17127.5058.1|Name=mRNA_Ecto-sp13_S_contig17127.5058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=358bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17127:2634..2991+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACAATCAAAGCGGGCGGGACCACGTAATTCCGCCGCCCCGCTGCCCCC
GCGCCCGCCGCCCGCCGAAAAAACACACAGAAAACATCTTCGTCAAACGA
GCTGGAGCCACGATAATCACAAATCCAGGCACACATTTACTCTCTACCAG
AGGAAGACGTTGACATATTTTATCACACGCCTGCCGAAAGTCCCTATACG
TGGTGGAATGGCTCCCCAGCTGTCTGCGTCAGGCCCTATTCCTACTTCAC
GCGGCGGTCAACCTGCTGGAAGACGCCTGATGTTCAGAGTTCTAAAGCAT
CGGCGGTTTAGCACGGCGATTTGGTCGATGCTGATGCTCCTGTCGTTCAT
CATGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17127:2634..2991+

>mRNA_Ecto-sp13_S_contig17127.5058.1 ID=mRNA_Ecto-sp13_S_contig17127.5058.1|Name=mRNA_Ecto-sp13_S_contig17127.5058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17127:2634..2991+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACAATCAAAGCGGGCGGGACCACGTAATTCCGCCGCCCCGCTGCCCCC
GCGCCCGCCGCCCGCCGAAAAAACACACAGAAAACATCTTCGTCAAACGA
GCTGGAGCCACGATAATCACAAATCCAGGCACACATTTACTCTCTACCAG
AGGAAGACGTTGACATATTTTATCACACGCCTGCCGAAAGTCCCTATACG
TGGTGGAATGGCTCCCCAGCTGTCTGCGTCAGGCCCTATTCCTACTTCAC
GCGGCGGTCAACCTGCTGGAAGACGCCTGATGTTCAGAGTTCTAAAGCAT
CGGCGGTTTAGCACGGCGATTTGGTCGATGCTGATGCTCCTGTCGTTCAT
CATGGTG
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