prot_Ecto-sp13_S_contig17127.5058.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17127.5058.1
Unique Nameprot_Ecto-sp13_S_contig17127.5058.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length119
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17127.5058.1 vs. uniprot
Match: D7FX30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX30_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.290e-15
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 
Query:   70 MAPQLSASGPIPTSRGGQPAGRRLMFRVLKHRRFSTAIWSMLMLLSFIMV 119
            MAPQLSA GPIP S GGQPAG RLM  VL+HRRFSTA+WSMLMLLSFIMV
Sbjct:    1 MAPQLSAPGPIPASGGGQPAGGRLMLGVLEHRRFSTAMWSMLMLLSFIMV 50
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BLAST of mRNA_Ecto-sp13_S_contig17127.5058.1 vs. uniprot
Match: A0A6H5J9S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.750e-14
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0 
Query:   70 MAPQLSASGPIPTSRGGQPAGRRLMFRVLKHRRFSTAIWSMLMLLSFIMV 119
            MAPQL ASGP P+S G QPAGR LM  VL+HRRFSTA+WSMLMLLSFIMV
Sbjct:    1 MAPQLPASGPFPSSGGSQPAGRLLMLGVLEHRRFSTAMWSMLMLLSFIMV 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17127.5058.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX30_ECTSI2.290e-1584.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9S6_9PHAE2.750e-1480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 119..119
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17127contigEcto-sp13_S_contig17127:2634..2990 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17127.5058.1mRNA_Ecto-sp13_S_contig17127.5058.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17127 2634..2991 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17127.5058.1 ID=prot_Ecto-sp13_S_contig17127.5058.1|Name=mRNA_Ecto-sp13_S_contig17127.5058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
PQSKRAGPRNSAAPLPPRPPPAEKTHRKHLRQTSWSHDNHKSRHTFTLYQ
RKTLTYFITRLPKVPIRGGMAPQLSASGPIPTSRGGQPAGRRLMFRVLKH
RRFSTAIWSMLMLLSFIMV
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