mRNA_Ecto-sp13_S_contig1054.506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1054.506.1
Unique NamemRNA_Ecto-sp13_S_contig1054.506.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1054.506.1 vs. uniprot
Match: D7FUI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI3_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 3.480e-109
Identity = 171/188 (90.96%), Postives = 175/188 (93.09%), Query Frame = 1 
Query:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVETSAPAEQEQVQEPAVTANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGGAGTAPGVERIVAGEDENGGAQKAPQTQRRAMGGSSTREAFQFEGFPDVGGSSGXXXXXXVGKGVVPPDF 564
            MDPSDDTSEGDAEMYASLRKRLEELEKQV TSAPA QEQVQEPAV ANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGS+SSRGGA TAPG+ERI AGED NGGAQ+APQT+RRAMGGSSTREAFQFEGFPDVGGS G      VGKGVVPPDF
Sbjct:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVGTSAPAPQEQVQEPAVAANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSMSSRGGASTAPGIERIAAGEDGNGGAQQAPQTKRRAMGGSSTREAFQFEGFPDVGGSGGGSGG--VGKGVVPPDF 186
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BLAST of mRNA_Ecto-sp13_S_contig1054.506.1 vs. uniprot
Match: A0A6H5KW30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW30_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 7.310e-101
Identity = 170/189 (89.95%), Postives = 174/189 (92.06%), Query Frame = 1 
Query:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVETSAPAEQE-QVQEPAVTANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGGAGTAPGVERIVAGEDENGGAQKAPQTQRRAMGGSSTREAFQFEGFPDVGGSSGXXXXXXVGKGVVPPDF 564
            MDPSDDTSEGDAEMYASLRKRLEELE +VETSAPA QE Q QEPAVTANN+GAREREWFTIPKE+PEDKRRS ALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRG AGTAPG ERIV GEDENGGAQ+ PQTQ RAMGGSSTREAFQFEGFPDVGG  G XXXXX  KGVVPPDF
Sbjct:   77 MDPSDDTSEGDAEMYASLRKRLEELENRVETSAPAAQEEQGQEPAVTANNRGAREREWFTIPKEAPEDKRRSLALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGSAGTAPGFERIVVGEDENGGAQQVPQTQGRAMGGSSTREAFQFEGFPDVGGG-GSXXXXXXXKGVVPPDF 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1054.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUI3_ECTSI3.480e-10990.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW30_9PHAE7.310e-10189.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1054contigEcto-sp13_S_contig1054:2406..4420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003820.1
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462537.0951586-CDS-Ecto-sp13_S_contig1054:2405..25541681462537.0951586-CDS-Ecto-sp13_S_contig1054:2405..2554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 2406..2554 +
1681462537.105561-CDS-Ecto-sp13_S_contig1054:3513..36471681462537.105561-CDS-Ecto-sp13_S_contig1054:3513..3647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 3514..3647 +
1681462537.115262-CDS-Ecto-sp13_S_contig1054:4136..44201681462537.115262-CDS-Ecto-sp13_S_contig1054:4136..4420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 4137..4420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1054.506.1prot_Ecto-sp13_S_contig1054.506.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1054 2406..4420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1054.506.1

>prot_Ecto-sp13_S_contig1054.506.1 ID=prot_Ecto-sp13_S_contig1054.506.1|Name=mRNA_Ecto-sp13_S_contig1054.506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MDPSDDTSEGDAEMYASLRKRLEELEKQVETSAPAEQEQVQEPAVTANNK
GAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGA
AFVHLGPREYPGSVSSRGGAGTAPGVERIVAGEDENGGAQKAPQTQRRAM
GGSSTREAFQFEGFPDVGGSSGGGSSGGVGKGVVPPDF*
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mRNA from alignment at Ecto-sp13_S_contig1054:2406..4420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1054.506.1 ID=mRNA_Ecto-sp13_S_contig1054.506.1|Name=mRNA_Ecto-sp13_S_contig1054.506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1054:2406..4420+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCATCGGATGATACCTCTGAGGGAGACGCCGAGATGTATGCCTC
GCTTCGGAAGCGGCTGGAGGAGCTGGAGAAGCAAGTGGAGACGAGTGCGC
CGGCTGAACAAGAACAAGTTCAAGAGCCGGCTGTGACAGCAAACAACAAG
TGAGAGTGATAGCTGATTCCTGTTGATTAGGGGGATAACTACACAACTGC
TTCACATCATCCTCTAACACTGCGGCCTGATGCCCTCGTCACACACACAC
AGCAGTGGTGAACGACAGAGTACATACGGAGCGTTCAAGAATAAGTAGTG
CCGTTGGGGTGATTGTGCGGAGACCCCTTCCGAAGCTCCGTCGCGACAGC
AGAGTTACCAAAATGGTGCATGCAGAGAACGGGACACCACCCTCCCCCGG
TATCAGCGCCCCGCCATTTCCATCTCCCGCAAAGTTTCTTCATCATCGCC
CCGACTCCAATTCACAATTCCAGCCCCCCTCCTGTGTGCAGATGCCATGC
TTGCTTGCTACTGCTGTGTGTCTATGTTCTAAGGGAAAAGTCTACCGACT
GTTGGCCGGCGGATATTAGAGTCAACGCCTACCGTAGATCGAGCAGCCGC
TACACCAAAAGTAGAATTGGTTCCTGCGCGTTTCTACTTTAATGCATACA
TGTAGCCTGGAGCAGCAGCACGTTTTTGGGGGTAATGGTAACCTCGTGAC
CCTACTTGCGGAGTATTTACAGCAACTTGAAGTCTTCGGTCGAAAGCAGT
TACGTTAGTCCCCAAGCATGCAACCAACAGAGGGAAGGGACTTCGCTGAA
CCCTTCTCGCATCAAATCCAGGGACTAGAGCACCGCGGGGGGGATGGTAA
GACTAACAACATAAGAGCTCTTGTGTGATGATGCCGGCGGAGAAGTCAAA
CACATTCCTGTAGGCAGCGCCAGAAGGTACACGCTCGGCATGTGGAATAC
TTATTGTTTACCCAGTCAGCCGTTAACCAATGCCTCCTTCCCTCCCTCCC
TCCCTACCCTGCCTCCCCGCCCGCCCGCCACCTGTTTCAAAACGTGAAAC
ACGAAAATGCACCAAATTGCTGTCGGTATTATTGCAACCCGCCGCCGCGG
GCCAAAAGGGGGGCGAGGGAGAGAGAGTGGTTCACGATACCGAAAGAGTC
GCCGGAGGACAAGAGAAGATCCCGCGCCCTGCTCACCATCCAGAGCGTTG
GCGTCATCTCCGCCGCGCTGTCCTTCGGGACGCTGGCCCTGTGTAAGCTG
TTGTTGTTGTTGTTATTGTTGTTGTCTTCACATTGACGGAAGAGAGTGCT
GCACGTTTCTCGCGTCGAAAGTTGAAGGCAAGCATCGCGGGAGGGTTGGG
CAGGGGGCGTCAGGGAGAGCAATACCCCTTTGTGTGACTGACCATGGACA
GGAGCTCCTATTGGTAGAAATTCTGTGTGTGTGAACGCTGATTGAACATT
ATGAAAACGAAAGGTCTCTACACCCGCACTGGTACATCTGAAGCCGCGCG
GGACTCCAGCCCCTGTGTACGTATGCGACTGGCGAAACAACGTGGTGTGC
TGGCTTGTACGTGAGCCCTCCCTACAGCAGGCAGGGAGGTGAACGCTGCT
CCACCGACGAGCGGTCGTTCGGTGCATACCGGGCACATTTTTCCTCTTTT
ACGCAACCTGTCACTATTGCGTGGTTACTTCAAACTAAGCTATCGTTGAT
ATACGTGCGGTTGCCATTTTTCGGCTGACAGACTGGCTAGCGGGTGCCGC
ATTCGTCCACCTCGGTCCACGAGAGTATCCCGGGTCGGTGTCGTCGCGAG
GGGGCGCCGGCACGGCACCGGGCGTCGAGAGAATAGTAGCGGGGGAAGAT
GAGAACGGGGGGGCTCAGAAGGCGCCGCAAACGCAGCGTCGTGCGATGGG
GGGAAGTTCGACGAGGGAGGCGTTTCAGTTCGAGGGGTTCCCGGACGTCG
GCGGCAGCAGCGGCGGCGGCAGCAGCGGCGGCGTCGGGAAGGGCGTGGTT
CCACCGGACTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1054:2406..4420+

>mRNA_Ecto-sp13_S_contig1054.506.1 ID=mRNA_Ecto-sp13_S_contig1054.506.1|Name=mRNA_Ecto-sp13_S_contig1054.506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1054:2406..4420+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCATCGGATGATACCTCTGAGGGAGACGCCGAGATGTATGCCTC
GCTTCGGAAGCGGCTGGAGGAGCTGGAGAAGCAAGTGGAGACGAGTGCGC
CGGCTGAACAAGAACAAGTTCAAGAGCCGGCTGTGACAGCAAACAACAAG
GGGGCGAGGGAGAGAGAGTGGTTCACGATACCGAAAGAGTCGCCGGAGGA
CAAGAGAAGATCCCGCGCCCTGCTCACCATCCAGAGCGTTGGCGTCATCT
CCGCCGCGCTGTCCTTCGGGACGCTGGCCCTGTACTGGCTAGCGGGTGCC
GCATTCGTCCACCTCGGTCCACGAGAGTATCCCGGGTCGGTGTCGTCGCG
AGGGGGCGCCGGCACGGCACCGGGCGTCGAGAGAATAGTAGCGGGGGAAG
ATGAGAACGGGGGGGCTCAGAAGGCGCCGCAAACGCAGCGTCGTGCGATG
GGGGGAAGTTCGACGAGGGAGGCGTTTCAGTTCGAGGGGTTCCCGGACGT
CGGCGGCAGCAGCGGCGGCGGCAGCAGCGGCGGCGTCGGGAAGGGCGTGG
TTCCACCGGACTTCTGA
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