prot_Ecto-sp13_S_contig1054.506.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1054.506.1
Unique Nameprot_Ecto-sp13_S_contig1054.506.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length189
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1054.506.1 vs. uniprot
Match: D7FUI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI3_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 3.480e-109
Identity = 171/188 (90.96%), Postives = 175/188 (93.09%), Query Frame = 0 
Query:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVETSAPAEQEQVQEPAVTANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGGAGTAPGVERIVAGEDENGGAQKAPQTQRRAMGGSSTREAFQFEGFPDVGGSSGXXXXXXVGKGVVPPDF 188
            MDPSDDTSEGDAEMYASLRKRLEELEKQV TSAPA QEQVQEPAV ANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGS+SSRGGA TAPG+ERI AGED NGGAQ+APQT+RRAMGGSSTREAFQFEGFPDVGGS G      VGKGVVPPDF
Sbjct:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVGTSAPAPQEQVQEPAVAANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSMSSRGGASTAPGIERIAAGEDGNGGAQQAPQTKRRAMGGSSTREAFQFEGFPDVGGSGGGSGG--VGKGVVPPDF 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1054.506.1 vs. uniprot
Match: A0A6H5KW30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW30_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 7.310e-101
Identity = 170/189 (89.95%), Postives = 174/189 (92.06%), Query Frame = 0 
Query:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVETSAPAEQE-QVQEPAVTANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGGAGTAPGVERIVAGEDENGGAQKAPQTQRRAMGGSSTREAFQFEGFPDVGGSSGXXXXXXVGKGVVPPDF 188
            MDPSDDTSEGDAEMYASLRKRLEELE +VETSAPA QE Q QEPAVTANN+GAREREWFTIPKE+PEDKRRS ALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRG AGTAPG ERIV GEDENGGAQ+ PQTQ RAMGGSSTREAFQFEGFPDVGG  G XXXXX  KGVVPPDF
Sbjct:   77 MDPSDDTSEGDAEMYASLRKRLEELENRVETSAPAAQEEQGQEPAVTANNRGAREREWFTIPKEAPEDKRRSLALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGSAGTAPGFERIVVGEDENGGAQQVPQTQGRAMGGSSTREAFQFEGFPDVGGG-GSXXXXXXXKGVVPPDF 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1054.506.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUI3_ECTSI3.480e-10990.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW30_9PHAE7.310e-10189.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..72
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 99..188
NoneNo IPR availableTMHMMTMhelixcoord: 80..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1054contigEcto-sp13_S_contig1054:2406..4420 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1054.506.1mRNA_Ecto-sp13_S_contig1054.506.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1054 2406..4420 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1054.506.1 ID=prot_Ecto-sp13_S_contig1054.506.1|Name=mRNA_Ecto-sp13_S_contig1054.506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MDPSDDTSEGDAEMYASLRKRLEELEKQVETSAPAEQEQVQEPAVTANNK
GAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGA
AFVHLGPREYPGSVSSRGGAGTAPGVERIVAGEDENGGAQKAPQTQRRAM
GGSSTREAFQFEGFPDVGGSSGGGSSGGVGKGVVPPDF*
back to top