mRNA_Ecto-sp13_S_contig17111.5050.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17111.5050.1
Unique NamemRNA_Ecto-sp13_S_contig17111.5050.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17111.5050.1 vs. uniprot
Match: A0A6H5KVL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL7_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 4.240e-42
Identity = 83/93 (89.25%), Postives = 84/93 (90.32%), Query Frame = 3 
Query:    3 RDRRTRSFTYGGRDRDPFAEWSGGIGGYPAQEESRSSGDASRNVHLPKASGGSPSGSGKVDSGGGERVEGSSAGEPRSPLRGCHRARQALPVS 281
            RDRRTRSFTYGGRDRD FAEWSGGIGG PA+EESRS  DASRNVHLPKASGGSPSGSGKVDSGGGERVEGSSAG  RSPLR CHRA Q LPVS
Sbjct:  268 RDRRTRSFTYGGRDRDLFAEWSGGIGGCPAREESRSRSDASRNVHLPKASGGSPSGSGKVDSGGGERVEGSSAGGSRSPLRECHRASQTLPVS 360
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17111.5050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVL7_9PHAE4.240e-4289.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17111contigEcto-sp13_S_contig17111:1950..2649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size701
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.3772418-CDS-Ecto-sp13_S_contig17111:1949..23691681462895.3772418-CDS-Ecto-sp13_S_contig17111:1949..2369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17111 1950..2369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.3890238-UTR-Ecto-sp13_S_contig17111:2369..26491681462895.3890238-UTR-Ecto-sp13_S_contig17111:2369..2649Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17111 2370..2649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17111.5050.1prot_Ecto-sp13_S_contig17111.5050.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17111 1950..2369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17111.5050.1

>prot_Ecto-sp13_S_contig17111.5050.1 ID=prot_Ecto-sp13_S_contig17111.5050.1|Name=mRNA_Ecto-sp13_S_contig17111.5050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
CGTGGREALPTAAATGIRSRNGAAASAGTPPRRSRGAVATRAGTCTSPRR
LAGVHPAAARSILEAGSVLKAAALVNLGRLSEDATARGRLYRCRKETGKR
VCEAFYLVGRARSTTTVLSSSGGCFPLLVSWCLVSRYRR*
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mRNA from alignment at Ecto-sp13_S_contig17111:1950..2649+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17111.5050.1 ID=mRNA_Ecto-sp13_S_contig17111.5050.1|Name=mRNA_Ecto-sp13_S_contig17111.5050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=700bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17111:1950..2649+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGGGACCGGCGGACGCGAAGCTTTACCTACGGCGGCCGCGACAGGGAT
CCGTTCGCGGAATGGAGCGGCGGCATCGGCGGGTACCCCGCCCAGGAGGA
GTCGCGGAGCAGTGGCGACGCGAGCAGGAACGTGCACCTCCCCAAGGCGT
CTGGCGGGAGTCCATCCGGCAGCGGCAAGGTCGATTCTGGAGGCGGGGAG
CGTGTTGAAGGCAGCAGCGCTGGTGAACCTCGGTCGCCTCTCCGAGGATG
CCACCGCGCGAGGCAGGCTTTACCGGTGTCGTAAAGAGACTGGAAAACGA
GTGTGTGAGGCCTTTTATCTCGTGGGGAGAGCAAGAAGCACCACCACCGT
GTTGTCGTCTTCTGGTGGATGTTTTCCGTTGTTGGTCTCCTGGTGCTTAG
TGTCTCGGTACCGACGTTGAATGCGCGAAGGAAGGATACGGGAGAGAGAA
AAAACCACCAAAGAGGGAGTTTGTGCCTCCGGCCATGCTCTTCCGAGGGG
CTGGCTCCGCCAAGGACGGGTGTTTCGGATGAAAGCTTGGGCGTTGTGAA
ACCGGGGAGGGGAAATGTCAGGGCAGCTCGGCCTTGGCTGATTCTCGGCC
TCTGATCGGGCGTTGCTTTTGGTGTGCTTGTTTCGTGGTCGTCAGCTGGG
GTTGGTGGCCCCGCGGGAACCACGACATCGCGCGCCGCGGCGGGCGGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17111:1950..2649+

>mRNA_Ecto-sp13_S_contig17111.5050.1 ID=mRNA_Ecto-sp13_S_contig17111.5050.1|Name=mRNA_Ecto-sp13_S_contig17111.5050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17111:1950..2649+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGGGACCGGCGGACGCGAAGCTTTACCTACGGCGGCCGCGACAGGGAT
CCGTTCGCGGAATGGAGCGGCGGCATCGGCGGGTACCCCGCCCAGGAGGA
GTCGCGGAGCAGTGGCGACGCGAGCAGGAACGTGCACCTCCCCAAGGCGT
CTGGCGGGAGTCCATCCGGCAGCGGCAAGGTCGATTCTGGAGGCGGGGAG
CGTGTTGAAGGCAGCAGCGCTGGTGAACCTCGGTCGCCTCTCCGAGGATG
CCACCGCGCGAGGCAGGCTTTACCGGTGTCGTAAAGAGACTGGAAAACGA
GTGTGTGAGGCCTTTTATCTCGTGGGGAGAGCAAGAAGCACCACCACCGT
GTTGTCGTCTTCTGGTGGATGTTTTCCGTTGTTGGTCTCCTGGTGCTTAG
TGTCTCGGTACCGACGTTGA
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