mRNA_Ecto-sp13_S_contig171.5041.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig171.5041.1
Unique NamemRNA_Ecto-sp13_S_contig171.5041.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A6H5L6Q0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q0_9PHAE)

HSP 1 Score: 1314 bits (3400), Expect = 0.000e+0
Identity = 715/889 (80.43%), Postives = 739/889 (83.13%), Query Frame = 1
Query:  124 MSARCNLSQEGKEDDSDEGGHETWSPGKRVSRTRHFSSCILRQALPTTSPIKLRHCQQTSNCSGEADEEQDSRNDNSTHSNTSE-TTCNGTYSSDEEPASRRENIWGGEIGATIMAEKEQHHGG-------AAPVHASSPVLSLPGPPSPRSREQAGKVSGSSAVMIRDHTFSVSPQARDSAPLSLSLQPVAVFRSRNSNYTPTSQRNRHSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGETFVLKQAWSDCAADSGMFAHSMLVSNLPGKVDDDQAGVLDVRLDGRSSSSGLIKVRAVGLERDHVTMTVRTRQGSILNGVPSPPNDSRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQAKRPIRLTFVRHACGRRFVGRDHGYGGGGTCRGAARQQPPFRIANCGGWDRCCGMMGKSGCGGKQPPNASCVGRLVSSPLPKIETEADGCPVAVILRARRQLRSGGIEQWCEVVASRRRLWQRLLRNLSPDSHSDRAKLRKLVGCSRSVDEHALKGRTGLVKRTLRNNYQRLISSRKGARKGSNTNGCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALALVQEPVEAMAYATLATLLQDRVMQALFPLGDVDLLDAYHLCGGRVVTFRTLSAARSPTPSEAAPTGKSGDGRHPFRGQGHRRIVEGDACSKVVSAGSLRKDKATTMCDTGGADRACGWEMGELEEEPTRQVVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQ 2766
            MSAR NLS+EGKED SDEG HETWSPGKRVSRTRH+SSCILRQALPTTSPIKLRHCQQTSNC+GE DEEQDSRNDNSTHSNTSE +TC+GTYSSDEEPASRR+NIWGG+ GATIMAE+ QHHG        AAPVHASSP+LSLPGPPSPRSR+QAGKV GSSAVM RDHT SVS QARD APLS S QPVAVFRSRNSNYTPTSQ N HSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGET VLKQAWSDCAADSGMFAHSMLVSN+PGKVDDDQA VLD  LDGR SSSGLIKVRAVGLERDH TMTVRTRQG+ILNG PSPP++SRG VVGVLELDEGDILVRVDNVQ                                                                                PPNASCVGRLVSSP PKIETEADGCPVAVILRARRQLRSGG+EQW E VASRRRLWQRLLRNLSPDSHSDRAKLRKLV CSRS D HALKG   LVK  LRNNYQRLISSRKG RK SNT+GCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAAL LVQEPVEAMAYATL TLLQ     ALFPLGDVDLLDAYHLCGGRVVTFR   AARSPTPSEAA  G+SGDG++PF GQGH R+ EGD  SKVVSAGSLRKDKATT+ DT GADRACGWE+GELEEE    VVVDEMLPRLVRIFGKALKRRLPALHGHLCKEA+PMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLK LNG+EILLQYGNLTANVSFQEVLRC LATQ
Sbjct:    1 MSARYNLSEEGKEDSSDEGDHETWSPGKRVSRTRHYSSCILRQALPTTSPIKLRHCQQTSNCNGEPDEEQDSRNDNSTHSNTSEQSTCSGTYSSDEEPASRRKNIWGGDTGATIMAERGQHHGDDGDIALVAAPVHASSPLLSLPGPPSPRSRKQAGKVLGSSAVMNRDHTLSVSSQARDPAPLSPSPQPVAVFRSRNSNYTPTSQPNHHSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGETLVLKQAWSDCAADSGMFAHSMLVSNVPGKVDDDQARVLDPWLDGRLSSSGLIKVRAVGLERDHATMTVRTRQGNILNGAPSPPSESRGRVVGVLELDEGDILVRVDNVQ--------------------------------------------------------------------------------PPNASCVGRLVSSPSPKIETEADGCPVAVILRARRQLRSGGMEQWYEAVASRRRLWQRLLRNLSPDSHSDRAKLRKLVVCSRSADGHALKG---LVKCKLRNNYQRLISSRKGLRKSSNTDGCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALVLVQEPVEAMAYATLVTLLQ-----ALFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEAAARGESGDGQYPFPGQGHLRMAEGDTRSKVVSAGSLRKDKATTIRDTDGADRACGWEIGELEEE----VVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAVPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKTLNGLEILLQYGNLTANVSFQEVLRCALATQ 797          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: D7FQL0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL0_ECTSI)

HSP 1 Score: 1311 bits (3392), Expect = 0.000e+0
Identity = 704/906 (77.70%), Postives = 745/906 (82.23%), Query Frame = 1
Query:  124 MSARCNLSQEGKEDDSDEGGHETWSPGKRVSRTRHFSSCILRQALPTTSPIKLRHCQQTSNCS-GEADEEQDSRNDN-STHSNTSETTCNGTYSSDEEPASRRENIWGGEIGATIMAEKEQHHGG------AAPVHASSPVLSLPGPPSPRSREQAGKVSGSSAVMIRDHTFSVSPQARDSAPLSLSLQPVAVFRSRNSNYTPTSQRNRHSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGETFVLKQAWSDCAADSGMFAHSMLVSNLPGKVDDDQAGVLDVRLDGRSSSSGLIKVRAVGLERDHVTMTVRTRQGSILNGVPSPPNDSRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQAKRPIRLTFVRHACGRRFVGRDHGYGGGGTCRGAARQQPPFRIANCGGWDRCCGMMGKSGCGGKQPPNASCVGRLVSSPLPKIETEADGCPVAVILRARRQLRSGGIEQWCEVVASRRRLWQRLLRNLSPDSHSDRAKLRKLVGCSRSVDEHALKGRTGLVKRTLRNNYQRLISSRKGARKGSNTNGCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALALVQEPVEAMAYATLATLLQDRVMQALFPLGDVDLLDAYHLCGGRVVTFRTLSAARSPTPSEAAPTGKSGDGRHPFRGQGHRRIVEGDACSKVVSAGSLRKDKATTMCDTGGADRACGWEMGELEEEPTRQVVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQSTRVSMGQRRSARHFVL 2817
            MSARCNLS+EGKEDDSDEG HETW PGKRVSRTR +SSCILRQALPTTSPIKLRHC QTSNC+ GEADEEQ  R+DN STHS TSE+T +GT +SDEEP S+RENIWGG+ GATIM E+ QH         AAPVHASSP+LSLPGPP PRSREQAGK S SS VMIRDHTFSVSPQARDSAPLSLS QPVAVFRSRNSNYT +SQ ++HSSTAIHEPRARCGCRGLTVR+DSGPLGLSLEASYRVGET VLKQAWSDCAADSGMFAHSMLVSN PGKVDDDQ  VLD+ LDGRSSSSGLIKVRAVGLER+H T TV TRQGS+LNG PSPPN+SRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQA+RP RLTFVRHACGRRFVGRD+GYGGGGTCRGAAR +PP R+A CGGWD CCGMMGKSGCGGKQPPNASCVGR+VSSP PKIETEADGCPVAVILRARRQLRSGG+EQW E+VASR  LWQRLLRNLSPDSHSDR+                                                                                       GGGGHVCPAHFAGG+KHAVFRVAFATASTLQFVSG+SYMAAL LVQEP+EAMAYATL TLLQ+RVMQALFPLGDVDLLDAYHLCGGRVVTFR   AARSPTPSE A  GKSGDG++PFRGQGHRR+ EGD  SKVVSAGS R+DKATT+ DTGGADRACGW+MGELEEE    VVV EMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNG+EILLQYGNLTANVSFQEVLRC LATQSTRVSMG  + +   +L
Sbjct:    1 MSARCNLSEEGKEDDSDEGDHETWFPGKRVSRTRQYSSCILRQALPTTSPIKLRHCPQTSNCNYGEADEEQGFRDDNNSTHSYTSESTRSGTCNSDEEPESKRENIWGGDTGATIMVERGQHGDDGDIALVAAPVHASSPLLSLPGPPGPRSREQAGKASSSSTVMIRDHTFSVSPQARDSAPLSLSPQPVAVFRSRNSNYTRSSQ-HKHSSTAIHEPRARCGCRGLTVRIDSGPLGLSLEASYRVGETIVLKQAWSDCAADSGMFAHSMLVSNFPGKVDDDQVRVLDLGLDGRSSSSGLIKVRAVGLERNHATTTVHTRQGSMLNGAPSPPNESRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQAERPTRLTFVRHACGRRFVGRDNGYGGGGTCRGAARHKPPCRVAYCGGWDGCCGMMGKSGCGGKQPPNASCVGRVVSSPSPKIETEADGCPVAVILRARRQLRSGGMEQWHELVASRGHLWQRLLRNLSPDSHSDRS---------------------------------------------------------------------------------------GGGGHVCPAHFAGGAKHAVFRVAFATASTLQFVSGISYMAALVLVQEPLEAMAYATLVTLLQERVMQALFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEPAARGKSGDGQYPFRGQGHRRMAEGDTRSKVVSAGSPREDKATTIRDTGGADRACGWQMGELEEE----VVVGEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGLEILLQYGNLTANVSFQEVLRCALATQSTRVSMGATKISTTLLL 814          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A421EX14_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EX14_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.610e-7
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 2449 FGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQ 2766
            F +   R LP LH HL  +   +     EWFTT ++ +T   LA    DLF V L DV +R+GLAIL++L   L  ++  + L ++  L   +   +V+   LA Q
Sbjct:   49 FEQMFIRDLPKLHAHLMVQGFAVPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGLQDVFLRVGLAILKLLEAKLMCMSFEDFLREFKPLVRELDPYQVILQALALQ 154          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A3F2S3X1_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3X1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.110e-5
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 1
Query: 2428 LPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQY 2706
            L   ++ F +   R LP LH HL  +   +     EWFTT ++ +T   LA    DLF V L DV +R+GLAIL++L   L  ++  + L ++
Sbjct:  178 LDEYLQHFEQMFIRDLPKLHAHLMVQGFTVPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGLQDVFLRVGLAILKLLEAKLMCMSFEDFLREF 270          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: K3WQH6_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQH6_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 6.420e-5
Identity = 35/129 (27.13%), Postives = 63/129 (48.84%), Query Frame = 1
Query: 2449 FGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQSTRVSMGQRRSA----RHFVLQS 2823
            F    +R LP LH H+  +   +     EWFTT ++ +T   LA    DLF V + D+ +R+GLAIL++L   L  +   + L ++  L   +   + +   L+ +   +  G+  +A     H++L +
Sbjct:  185 FNLMFQRELPDLHQHILSQGFVIPMYGIEWFTTLFSLSTKADLACAIFDLFFVGVQDIFLRMGLAILKLLESKLMCMTFEDFLREFKPLVRQIDPYQAIFQALSFRPNPLVRGEDTTAYISRAHYLLSA 313          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A662WPF7_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPF7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.040e-5
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 2428 LPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVL 2745
            L   ++ F    +R LP LH HL  +   +     EWFTT ++ +T   LA    DLF V + D+ +R+GLAIL++L   L  +   + L ++  L   +   +V+
Sbjct:  195 LDEYLQHFEVMFRRDLPKLHAHLLAQGFALPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGVQDIFLRVGLAILKLLEAKLMCMTCEDFLREFKLLVRELDPYQVI 300          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L6Q0_9PHAE0.000e+080.43Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7FQL0_ECTSI0.000e+077.70Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A421EX14_9STRA5.610e-734.91Rab-GAP TBC domain-containing protein n=2 Tax=Phyt... [more]
A0A3F2S3X1_9STRA3.110e-535.48Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
K3WQH6_GLOUD6.420e-527.13Rab-GAP TBC domain-containing protein n=1 Tax=Glob... [more]
A0A662WPF7_9STRA8.040e-531.13Rab-GAP TBC domain-containing protein n=2 Tax=Noth... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig171contigEcto-sp13_S_contig171:14505..21821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score61.6
Seed ortholog evalue2.3e-06
Seed eggNOG ortholog272952.HpaP805086
Model size2873
KEGG koko:K20242
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.
EggNOG OGs3Q8ZI@4776,KOG4436@1,KOG4436@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-01_009090.1
Cds size2871
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig171.5041.1prot_Ecto-sp13_S_contig171.5041.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig171 14505..21821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.6420178-CDS-Ecto-sp13_S_contig171:14504..146091681462894.6420178-CDS-Ecto-sp13_S_contig171:14504..14609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 14505..14609 -
1681462894.6525164-CDS-Ecto-sp13_S_contig171:15247..153611681462894.6525164-CDS-Ecto-sp13_S_contig171:15247..15361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 15248..15361 -
1681462894.6609764-CDS-Ecto-sp13_S_contig171:15722..158691681462894.6609764-CDS-Ecto-sp13_S_contig171:15722..15869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 15723..15869 -
1681462894.6695225-CDS-Ecto-sp13_S_contig171:16677..167851681462894.6695225-CDS-Ecto-sp13_S_contig171:16677..16785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 16678..16785 -
1681462894.6803355-CDS-Ecto-sp13_S_contig171:17034..173551681462894.6803355-CDS-Ecto-sp13_S_contig171:17034..17355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 17035..17355 -
1681462894.6891334-CDS-Ecto-sp13_S_contig171:17746..178701681462894.6891334-CDS-Ecto-sp13_S_contig171:17746..17870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 17747..17870 -
1681462894.699672-CDS-Ecto-sp13_S_contig171:18477..187451681462894.699672-CDS-Ecto-sp13_S_contig171:18477..18745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 18478..18745 -
1681462894.7134573-CDS-Ecto-sp13_S_contig171:19236..192941681462894.7134573-CDS-Ecto-sp13_S_contig171:19236..19294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 19237..19294 -
1681462894.7277863-CDS-Ecto-sp13_S_contig171:19616..197721681462894.7277863-CDS-Ecto-sp13_S_contig171:19616..19772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 19617..19772 -
1681462894.738176-CDS-Ecto-sp13_S_contig171:20108..204051681462894.738176-CDS-Ecto-sp13_S_contig171:20108..20405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 20109..20405 -
1681462894.747711-CDS-Ecto-sp13_S_contig171:20648..218211681462894.747711-CDS-Ecto-sp13_S_contig171:20648..21821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 20649..21821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig171.5041.1

>prot_Ecto-sp13_S_contig171.5041.1 ID=prot_Ecto-sp13_S_contig171.5041.1|Name=mRNA_Ecto-sp13_S_contig171.5041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=957bp
MSLREPRRELRVQWANEAEGLPISDPLKSVDHDHHDYHAVVMSARCNLSQ
EGKEDDSDEGGHETWSPGKRVSRTRHFSSCILRQALPTTSPIKLRHCQQT
SNCSGEADEEQDSRNDNSTHSNTSETTCNGTYSSDEEPASRRENIWGGEI
GATIMAEKEQHHGGAAPVHASSPVLSLPGPPSPRSREQAGKVSGSSAVMI
RDHTFSVSPQARDSAPLSLSLQPVAVFRSRNSNYTPTSQRNRHSSTAIHE
PRARCGCRGLTVRVDSGPLGLSLEASYRVGETFVLKQAWSDCAADSGMFA
HSMLVSNLPGKVDDDQAGVLDVRLDGRSSSSGLIKVRAVGLERDHVTMTV
RTRQGSILNGVPSPPNDSRGSVVGVLELDEGDILVRVDNVQVTKKSFTEV
ASLLDQAKRPIRLTFVRHACGRRFVGRDHGYGGGGTCRGAARQQPPFRIA
NCGGWDRCCGMMGKSGCGGKQPPNASCVGRLVSSPLPKIETEADGCPVAV
ILRARRQLRSGGIEQWCEVVASRRRLWQRLLRNLSPDSHSDRAKLRKLVG
CSRSVDEHALKGRTGLVKRTLRNNYQRLISSRKGARKGSNTNGCNKAKRA
LAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVF
RVAFATASTLQFVSGMSYMAALALVQEPVEAMAYATLATLLQDRVMQALF
PLGDVDLLDAYHLCGGRVVTFRTLSAARSPTPSEAAPTGKSGDGRHPFRG
QGHRRIVEGDACSKVVSAGSLRKDKATTMCDTGGADRACGWEMGELEEEP
TRQVVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTA
YARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILL
QYGNLTANVSFQEVLRCTLATQSTRVSMGQRRSARHFVLQSAWPLGVKVV
VAFGRST
back to top

mRNA from alignment at Ecto-sp13_S_contig171:14505..21821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig171.5041.1 ID=mRNA_Ecto-sp13_S_contig171.5041.1|Name=mRNA_Ecto-sp13_S_contig171.5041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig171:14505..21821- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTTGCGCGAGCCTCGAAGGGAGCTACGGGTCCAATGGGCAAACGA GGCAGAGGGTCTTCCAATCTCGGACCCCTTGAAGTCGGTGGATCATGATC ATCATGACTACCACGCGGTCGTGATGTCAGCTAGATGTAACTTGTCGCAG GAGGGCAAAGAAGACGACTCCGACGAAGGCGGCCATGAGACGTGGTCCCC AGGGAAGAGGGTGTCGAGAACGCGGCATTTCTCTTCTTGTATACTGCGGC AGGCCCTGCCAACAACATCCCCTATCAAGCTAAGGCATTGCCAGCAGACA TCGAACTGCAGCGGCGAAGCCGACGAAGAACAGGATAGCCGAAACGACAA CAGCACTCATTCGAATACGTCGGAAACCACTTGCAACGGGACGTACAGTA GTGACGAAGAGCCAGCAAGCAGGAGGGAGAACATCTGGGGCGGAGAAATT GGGGCCACAATCATGGCGGAAAAAGAACAACATCATGGTGGCGCTGCTCC CGTGCACGCTTCGTCGCCTGTGCTATCATTGCCGGGACCACCTAGTCCGA GGTCTCGTGAGCAAGCGGGGAAAGTATCAGGATCATCAGCGGTGATGATT AGGGACCACACCTTTTCCGTGTCTCCACAGGCGCGGGATTCTGCCCCGTT GAGTCTCTCTCTTCAGCCTGTTGCCGTATTCCGTTCAAGAAACAGCAACT ACACCCCAACCTCCCAACGCAATCGTCACTCGTCCACTGCGATTCATGAA CCGCGCGCCCGATGCGGTTGCCGTGGCCTCACTGTGCGTGTCGATTCTGG TCCTCTTGGCCTCTCCCTGGAGGCCAGTTACCGAGTGGGGGAGACGTTTG TGTTGAAACAGGCGTGGAGTGACTGTGCCGCAGACAGTGGGATGTTCGCG CACTCCATGCTTGTATCAAACTTACCGGGGAAGGTGGACGATGACCAAGC CGGGGTCTTGGATGTAAGGCTCGACGGTAGATCGTCATCGTCGGGCCTCA TCAAGGTTCGGGCGGTAGGCCTCGAACGTGACCACGTGACGATGACCGTC CGCACTCGCCAAGGCAGCATCCTCAACGGAGTGCCTTCTCCTCCAAATGA CTCACGCGGGAGCGTCGTAGGAGTCCTCGAGCTGGATGAAGGAGACATAC TTGTTCGGGTGGATAACGTGCAGGTGTGCACAGCTTGCATTAGTAATTGT TGTAACAGGAGCCAGAGATTATCACGTTGCTGTTCGAAAGACCCGGATTA AAATGCTCGTATTTTCACAACCTCCAAGTGCGTACGGCTGGGGGATAATT TTTTTCAACTGGTGTTTCTTTGTCGGCCGCCTGCAACACATCCACAATGG CCATGCAGCCTCCTGACGGACCCACATTCTTTCATCTCAACCTTCCTTTT CGTTCCCATTAAAAAGGTGACGAAGAAAAGCTTTACAGAGGTTGCCAGCC TTTTGGATCAAGCGAAACGCCCGATCCGCCTAACTTTCGTTCGACACGCG TGTGGGCGAAGATTTGTCGGCCGTGATCACGGCTACGGCGGTGGTGGAAC ATGCCGCGGTGCAGCTCGACAGCAGCCCCCCTTTCGGATCGCTAACTGTG GTGGTTGGGATAGGTGCTGCGGGATGATGGGCAAGTCGGGATGTGGGGGC AAGCAGCCGCCGAACGCTTCGTGCGTTGGTCGGCTGGTTTCGAGTCCTTT GCCAAAGATCGAGGTACGTGCACGAACGCTCATGCAGAAATAGAGAGGCA GAAGTGATCCGCGCCACAAGCAACAAGATTGGGCCATCAGAGATCATCCG CATGGAATTATTACAGAATGACATTGTTTGCCACCGAAATGGGGTCACGT CACTTGAAACGAAGCCAGAGAAGACAGCAGTTCCTTCCACATATCGTGCA TTTTCTGAAGAAAAACGGCATTCAACGAAGTACCGCGAAACGTTCGCCTG TCGACTACATGCAGAGGAACTCAAACACACACAGTATACGTGCTGATTTC TGGTAATCCATCCCGGCTTCCCTTTCGGCCACCCGTTACCACACTGTAGA CCGAAGCGGACGGGTGTCCAGTGGCGGTGATACTGCGTGCACGACGGCAG CTCCGATCGGGCGGTATAGAGCAGTGGTGCGAGGTAGTAGCATCAAGAAG GCGCCTTTGGCAGAGGCTGCTGAGAAATCTCTCGCCAGACTCTCACTCGG ATCGGGTGAGCACACGCTAAATTTGTACAGGATTGGCGCTGCTTAGCCGC ACACGCTCTTGTGTGTCGGTGTGGTGGTGATGGTTCAACTAGAAGCCACC GTGCCTCGTGGGCAGGCTTCTTTGAGTGCTCCCGTTGAAGTATGCCATGC GTATTGTTGGTGCTGCGCCCGATACGAAGCATAGCGAAGCAAGGCTACCA ATTTCATTATGACGCAATCTATGAGAACGTGTCTCCTACGAGCACGACGT TCAAGTTATTGACGAAAAAGATCCATTGAAACTGCACACATATGAAACCA TCATTCTACATTGTCGTCTGTTCGCAGGCAAAACTCCGGAAACTGGTTGG TTGTTCACGCTCGGTGGATGAGCATGCCTTAAAAGGTATGCAGCTCCGAC ATCGAAGTATATGGTAGTACCGCTTGTCTTAGGATGCTTGAATTATTCTG TTGGTCAGTATAACGTCCTGCCCAAACCCGTCGCGTCCACCGCAAGATAG GACCGGGAATTTCGTAGACAAGCGCCGATTGCTCAAAGCTGAGCATTCGA GAAGGAAAGTCGCTCATAAAACTTTCAAGGACCTTAGAAAGACCTACGCA GGGCGGGGAGTACTACAGTAATAGCGCACACACGTCGAATGTACGGGAAC AAGGTGATTTTGACATATCTCGGTCGAGGCCCATCATTCTCCGACACCCT GGTCTACCTGGTTCTGTGGTTGCGGTGGCACCTTCTTTCTCATGATACCT GGCTGTTGGCAAGCAAGGAGGGCTGTAGAAGAGTAAGCAGGCCAGACGCC GTGTCTGCCTGCCTCGGCGCATTTGTCGCGTTGTAATCGTTCCTTCCCCG TTCCTCGACCTATCTCAATTTCTCAGGTAGAACAGGGCTTGTCAAGCGTA CACTCAGGAACAACTATCAGCGCTTGATCAGCAGCCGGAAAGGCGCGCGC AAAGGCAGCAATACTAATGGCTGCAACAAGGCCAAGAGAGCATTGGCTGC GAAAGTGTGGAAGGACGTCAATCGTACCATGTCGCCGAGACGCCACGGGG CGCGCCCTGGATTTTTTTCGGCCTCTCAGTTGGGCGGCGGAGGACACGTA TGTCCTGCGCACTTCGCGGGAGGGTCCAAACACGCCGTGTTCAGGTGCGT TCTTGGTAGGGTCACAAAGGAATCCAGGAGATGATGGACTTCTCGATTTC GCCGATTTCGTGGTGTAGCGCATTGCCAGCGATGAGGGAAAAACGACAGA AAAGAACGAACTGCAGACCACCTACGTGCAACCTCTCGTTGTGTGTGTTG TTGCACGGACATGGCATAGCCTAAGAACTTACTGTCGTATATCTTGTTTG TCTTTTACTACGTTGCGGTTGTGTGGCCTATTCGATGGAATCTAAGCCGG TCACAAGAAAATATCTACAAGCTCCTCCGAACAATCTATGGGCGCGCGAC CAGAGTACATGGCGCCGCCCGTTCGGGGTGTTCCTTGAATATTCACTTTG CCATTGGCGGAGAATTGCCGGCATCGTAGACAAAAAAAGTCAAGCTTGGG TGTGACCACGATCCGCGAAAATACTTGATTCGGCGACTACCGACGGACGG TGTGGCAATATACAGCGGGGGAACAAAAAGCGCGTTCAGATTCCGGACGC CAGTCGCCGGGGTACCACTCATGGGGAACAATTTCCGGCTAAACTGTTCT AAATCCTCCGTCCCTGTTAATCATCTGCCAATCTTTGGCACCTATTTTCA GAGTCGCCTTCGCCACGGCATCCACGCTGCAGTTCGTGTCCGGCATGAGC TACATGGCAGCGCTGGCACTCGTTCAAGAGCCCGTGGAAGCCATGGCTTA CGCGACGTTGGCCACCTTGCTTCAGGTGCCGTGTACATTCGAATCGTTTG ATGTGTGACAGTACCTTTTGGGCACGTCACATATGTACCTCGTCAACAAG AACATGCTCTGTTCGTTGTTGCAGTAACGAGCACCTCGCTTAACATTTTT TCCTGTTGGTCTACATGCACCCAAGTCAAAGCTACATAAGAAAGACAGAA TTCTCACCACCCCGGTGTGTCCGGCGTGGAGCGCGACTCGCCCGACCAAA ATGGTTCCGCCATCAAGTATAACCGAGCCATAAACGCGAGTGATGCTATG TACATCTACGTACACGAACAAATGGTCCTCCAATGGGACTCTCTCCAAAA AATCAACGTGCCTCCATCTTTGATACGGCCTCCTCGCCTCTGAAACCCAA CGGGGACCATTCCCAGGATCGAGTGATGCAGGCTCTGTTTCCGCTAGGCG ACGTCGATCTACTCGACGCGTACCACCTGTGCGGCGGTCGTGTGGTGACT TTTCGCACGCTCAGTGCTGCTCGGAGCCCAACGCCCTCCGAAGCTGCCCC TACGGGGAAGAGTGGTGATGGCCGACATCCGTTTCGTGGCCAGGGGCACC GACGCATTGTGGAAGGAGATGCTTGTTCCAAAGTGGTCAGCGCTGGTTCT CTCCGGAAGGATAAAGCCACCACGATGTGCGACACCGGTGGTGCGGACAG GGCCTGTGGATGGGAAATGGGCGAACTGGAGGAAGAGGTGACAAAATCCA GCATTTACTTGTCGGAGCATGAGGAGGGGGGGGGGCAATTCTGTTGTTGT TGTACTCACACACGACCCATCAAGCGAAGCCAGCTAAGAACCTCTACCTC ACACAACGAGATTGACAGCAGGGGAAACTGTGAAAGCATTCCATGCGCAT GCTGCCGCAGAGAGGCCGAGTCTTGGAAGCCTGTAACCTGGACGCGCACG TATTTGTCTTGTTGGTGGTGGTCTGCCACTCGCCAGCCGACCCGGCAGGT GGTCGTGGACGAGATGCTGCCGCGGCTCGTGCGCATCTTCGGAAAGGCTT TGAAGCGACGGTTGCCGGCACTTCATGGCCACCTGTGCAAGGAGGTACGG AAGCTTACCCGCCCTCAGCGAACCGCAAGCACCACAACCTGTAGTCACAC GAGAGTACGCGCACACGAAAACGGAAATGTTGACGTCAGCGCAAGAAAGC TCGTGCACATGTTACAAATAACAGCAACCATCACTGCGTCGGTCGCGACA GAAATCGGATCCTGAACGCCTGCGCCAGTGCTAAAAGGCAAACCCCACGG TGGATTTTCCGCTCTCGCATTCAACCGTTGCGTATGTAGTCCAGCTCGAG GATTAGACGAATCAGGGTTTAGGTACTTGGCACATTTCGCGCTTGCCACC ACGGCCAAAACAACAACGTCTGACATTAGGTTTCCTACTTTTGCCCAGGT TCCCGTGGATTGGTACCCCACACCGTAACTTCTAGCGGACCAGCGCACAT GTGTCGCATGTTGCTCGTCGGAGATGTGCAGCCAGGCAGCCATTTCCCTG CTGATAATCACCACACAACACCCGTCGGCGGATGGAGTGCCGGTCCCCAA AAAGGAAACATTCTCACAAGAAACAGAGTGTCAGGTTCTTGAAAAAACGA ACAAACAAGAAACATGACCTAAGAAACTGGGCTCAGCCGCTGGCCATCAT ATGAAAACATGGTATATGGTAGCTTTCCAAAGCCTGTGTTCAATCTTTGA GACATCAAGGTCTTGGGCATTTGCTCAGAATGGGCCAACTAGCTTGCCGG CGTTCTAAGTGGGTTGACACGCCGCACCATATACATCGACCCACAATTTC CCCTCCGCGATATTCCAATCGAATTATCCGACCTCATTTCTCGTCCGTCC AGGCGATTCCGATGTCGTTCCTGTGCGCGGAGTGGTTCACCACGGCGTAC GCGCGCAATACCCCCCTGCCCCTGGCGCTGTGCGCCCTTGACTTGTTCCT CGTGCGTTTGGACGACGTCATGATCCGTTTGGGCCTCGCTATCCTCGAGG TTTGACACAGCACAAGATGGGGGAACGCCATCTTTTTCTGATGGTCGTGG TAGGTGCACGTCCTAGTGATGATCGTCCGTCAGGAACAAGAGGAGACATT CCCTAGACTTGTGCCGGCGGCCGAACAGACTTCGCTCGTGTCTTCCAAAC GCGTTGGAGACATGGAGAAAATTTCCGAACGGAGTGCATCTAGGATTGGT GAATGCTTCGCTCGAGGGTCCTCAAACCTGTGGCTCATTTGGAGGCAAAC CTCCCAAGCGAAGAGCGCCAAGGAACTGTAAGTGCCGTCGTGCAAAATGG ACCGACCGCAAACCCCAACCTTGTGAGGTGAAAGAAAACGTAACCTTTTT ATCTCGACAGGTGTTAGCACCGTCCTTGAAAATGCTGAACGGGATGGAGA TCTTGCTACAGTACGGAAACCTCACGGCGAACGTTTCCTTCCAAGAGGTG CTGCGGTGTACGCTGGCCACGCAGGTGAGTGCCGAACATGTGTTCGATAC GCAATATGGCATGTTCTTCGCCGTGCGAAGTCTGAAATTTGTTTTTATGT CTTCAAATGTACGCTTTGAAACGGTGGCTACAGCTGCCCAGTCGCCAATG CCTGGTAGAGTGGTACACCAAGCATTTGACAAAACTACCTCCTATTGTGC AGGTGTGGATTTGGGTTGTCCGCATAACCAAAGGGGGGGCTCTCAATCAC CGTTCCACTTTTGAGACGCCTGTAACTTTGCCAGTCGAAACAAGGGCTTT GAAAAATGTCTTCCTGAAACAGAGAGAATGCAACAATGGATAAGCTTGAA AAATGTTTTCCCCTCACTTTCATGAAGAAGCAGCTCCAGAATTGACTTGA GAAAAACGGTGGTAACCAGAAATGCTTGCCTCCTTCTCTATGGCTCTGTT CCCGCCTCTCCCGTCTGTCTGTCCAATACGAACAGCCGCGGCAGCCTCCC TTGTTGCAGAAACCCGGCCTTGACATTCCTTTAAGCTCGTCGGAACATCG GTCCATGGCACCATGCGCACTCAGCTAGCACACCAAGCCAGACGACGGAT TGGCAATACGGGGCCGTGTTGCTTGGTCAAAACCACCGCATGTTACTCGT GCGGTTGTACAGAGCACGAGGGTCTCGATGGGGCAACGAAGATCAGCACG ACACTTCGTCCTCCAGAGCGCATGGCCACTCGGAGTCAAAGTCGTCGTCG CTTTTGGGCGAAGTACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig171:14505..21821-

>mRNA_Ecto-sp13_S_contig171.5041.1 ID=mRNA_Ecto-sp13_S_contig171.5041.1|Name=mRNA_Ecto-sp13_S_contig171.5041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2871bp|location=Sequence derived from alignment at Ecto-sp13_S_contig171:14505..21821- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTTGCGCGAGCCTCGAAGGGAGCTACGGGTCCAATGGGCAAACGA
GGCAGAGGGTCTTCCAATCTCGGACCCCTTGAAGTCGGTGGATCATGATC
ATCATGACTACCACGCGGTCGTGATGTCAGCTAGATGTAACTTGTCGCAG
GAGGGCAAAGAAGACGACTCCGACGAAGGCGGCCATGAGACGTGGTCCCC
AGGGAAGAGGGTGTCGAGAACGCGGCATTTCTCTTCTTGTATACTGCGGC
AGGCCCTGCCAACAACATCCCCTATCAAGCTAAGGCATTGCCAGCAGACA
TCGAACTGCAGCGGCGAAGCCGACGAAGAACAGGATAGCCGAAACGACAA
CAGCACTCATTCGAATACGTCGGAAACCACTTGCAACGGGACGTACAGTA
GTGACGAAGAGCCAGCAAGCAGGAGGGAGAACATCTGGGGCGGAGAAATT
GGGGCCACAATCATGGCGGAAAAAGAACAACATCATGGTGGCGCTGCTCC
CGTGCACGCTTCGTCGCCTGTGCTATCATTGCCGGGACCACCTAGTCCGA
GGTCTCGTGAGCAAGCGGGGAAAGTATCAGGATCATCAGCGGTGATGATT
AGGGACCACACCTTTTCCGTGTCTCCACAGGCGCGGGATTCTGCCCCGTT
GAGTCTCTCTCTTCAGCCTGTTGCCGTATTCCGTTCAAGAAACAGCAACT
ACACCCCAACCTCCCAACGCAATCGTCACTCGTCCACTGCGATTCATGAA
CCGCGCGCCCGATGCGGTTGCCGTGGCCTCACTGTGCGTGTCGATTCTGG
TCCTCTTGGCCTCTCCCTGGAGGCCAGTTACCGAGTGGGGGAGACGTTTG
TGTTGAAACAGGCGTGGAGTGACTGTGCCGCAGACAGTGGGATGTTCGCG
CACTCCATGCTTGTATCAAACTTACCGGGGAAGGTGGACGATGACCAAGC
CGGGGTCTTGGATGTAAGGCTCGACGGTAGATCGTCATCGTCGGGCCTCA
TCAAGGTTCGGGCGGTAGGCCTCGAACGTGACCACGTGACGATGACCGTC
CGCACTCGCCAAGGCAGCATCCTCAACGGAGTGCCTTCTCCTCCAAATGA
CTCACGCGGGAGCGTCGTAGGAGTCCTCGAGCTGGATGAAGGAGACATAC
TTGTTCGGGTGGATAACGTGCAGGTGACGAAGAAAAGCTTTACAGAGGTT
GCCAGCCTTTTGGATCAAGCGAAACGCCCGATCCGCCTAACTTTCGTTCG
ACACGCGTGTGGGCGAAGATTTGTCGGCCGTGATCACGGCTACGGCGGTG
GTGGAACATGCCGCGGTGCAGCTCGACAGCAGCCCCCCTTTCGGATCGCT
AACTGTGGTGGTTGGGATAGGTGCTGCGGGATGATGGGCAAGTCGGGATG
TGGGGGCAAGCAGCCGCCGAACGCTTCGTGCGTTGGTCGGCTGGTTTCGA
GTCCTTTGCCAAAGATCGAGACCGAAGCGGACGGGTGTCCAGTGGCGGTG
ATACTGCGTGCACGACGGCAGCTCCGATCGGGCGGTATAGAGCAGTGGTG
CGAGGTAGTAGCATCAAGAAGGCGCCTTTGGCAGAGGCTGCTGAGAAATC
TCTCGCCAGACTCTCACTCGGATCGGGCAAAACTCCGGAAACTGGTTGGT
TGTTCACGCTCGGTGGATGAGCATGCCTTAAAAGGTAGAACAGGGCTTGT
CAAGCGTACACTCAGGAACAACTATCAGCGCTTGATCAGCAGCCGGAAAG
GCGCGCGCAAAGGCAGCAATACTAATGGCTGCAACAAGGCCAAGAGAGCA
TTGGCTGCGAAAGTGTGGAAGGACGTCAATCGTACCATGTCGCCGAGACG
CCACGGGGCGCGCCCTGGATTTTTTTCGGCCTCTCAGTTGGGCGGCGGAG
GACACGTATGTCCTGCGCACTTCGCGGGAGGGTCCAAACACGCCGTGTTC
AGAGTCGCCTTCGCCACGGCATCCACGCTGCAGTTCGTGTCCGGCATGAG
CTACATGGCAGCGCTGGCACTCGTTCAAGAGCCCGTGGAAGCCATGGCTT
ACGCGACGTTGGCCACCTTGCTTCAGGATCGAGTGATGCAGGCTCTGTTT
CCGCTAGGCGACGTCGATCTACTCGACGCGTACCACCTGTGCGGCGGTCG
TGTGGTGACTTTTCGCACGCTCAGTGCTGCTCGGAGCCCAACGCCCTCCG
AAGCTGCCCCTACGGGGAAGAGTGGTGATGGCCGACATCCGTTTCGTGGC
CAGGGGCACCGACGCATTGTGGAAGGAGATGCTTGTTCCAAAGTGGTCAG
CGCTGGTTCTCTCCGGAAGGATAAAGCCACCACGATGTGCGACACCGGTG
GTGCGGACAGGGCCTGTGGATGGGAAATGGGCGAACTGGAGGAAGAGCCG
ACCCGGCAGGTGGTCGTGGACGAGATGCTGCCGCGGCTCGTGCGCATCTT
CGGAAAGGCTTTGAAGCGACGGTTGCCGGCACTTCATGGCCACCTGTGCA
AGGAGGCGATTCCGATGTCGTTCCTGTGCGCGGAGTGGTTCACCACGGCG
TACGCGCGCAATACCCCCCTGCCCCTGGCGCTGTGCGCCCTTGACTTGTT
CCTCGTGCGTTTGGACGACGTCATGATCCGTTTGGGCCTCGCTATCCTCG
AGGTGTTAGCACCGTCCTTGAAAATGCTGAACGGGATGGAGATCTTGCTA
CAGTACGGAAACCTCACGGCGAACGTTTCCTTCCAAGAGGTGCTGCGGTG
TACGCTGGCCACGCAGAGCACGAGGGTCTCGATGGGGCAACGAAGATCAG
CACGACACTTCGTCCTCCAGAGCGCATGGCCACTCGGAGTCAAAGTCGTC
GTCGCTTTTGGGCGAAGTACG
back to top