prot_Ecto-sp13_S_contig171.5041.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig171.5041.1
Unique Nameprot_Ecto-sp13_S_contig171.5041.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length957
Homology
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A6H5L6Q0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q0_9PHAE)

HSP 1 Score: 1314 bits (3400), Expect = 0.000e+0
Identity = 715/889 (80.43%), Postives = 739/889 (83.13%), Query Frame = 0
Query:   42 MSARCNLSQEGKEDDSDEGGHETWSPGKRVSRTRHFSSCILRQALPTTSPIKLRHCQQTSNCSGEADEEQDSRNDNSTHSNTSE-TTCNGTYSSDEEPASRRENIWGGEIGATIMAEKEQHHGG-------AAPVHASSPVLSLPGPPSPRSREQAGKVSGSSAVMIRDHTFSVSPQARDSAPLSLSLQPVAVFRSRNSNYTPTSQRNRHSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGETFVLKQAWSDCAADSGMFAHSMLVSNLPGKVDDDQAGVLDVRLDGRSSSSGLIKVRAVGLERDHVTMTVRTRQGSILNGVPSPPNDSRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQAKRPIRLTFVRHACGRRFVGRDHGYGGGGTCRGAARQQPPFRIANCGGWDRCCGMMGKSGCGGKQPPNASCVGRLVSSPLPKIETEADGCPVAVILRARRQLRSGGIEQWCEVVASRRRLWQRLLRNLSPDSHSDRAKLRKLVGCSRSVDEHALKGRTGLVKRTLRNNYQRLISSRKGARKGSNTNGCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALALVQEPVEAMAYATLATLLQDRVMQALFPLGDVDLLDAYHLCGGRVVTFRTLSAARSPTPSEAAPTGKSGDGRHPFRGQGHRRIVEGDACSKVVSAGSLRKDKATTMCDTGGADRACGWEMGELEEEPTRQVVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQ 922
            MSAR NLS+EGKED SDEG HETWSPGKRVSRTRH+SSCILRQALPTTSPIKLRHCQQTSNC+GE DEEQDSRNDNSTHSNTSE +TC+GTYSSDEEPASRR+NIWGG+ GATIMAE+ QHHG        AAPVHASSP+LSLPGPPSPRSR+QAGKV GSSAVM RDHT SVS QARD APLS S QPVAVFRSRNSNYTPTSQ N HSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGET VLKQAWSDCAADSGMFAHSMLVSN+PGKVDDDQA VLD  LDGR SSSGLIKVRAVGLERDH TMTVRTRQG+ILNG PSPP++SRG VVGVLELDEGDILVRVDNVQ                                                                                PPNASCVGRLVSSP PKIETEADGCPVAVILRARRQLRSGG+EQW E VASRRRLWQRLLRNLSPDSHSDRAKLRKLV CSRS D HALKG   LVK  LRNNYQRLISSRKG RK SNT+GCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAAL LVQEPVEAMAYATL TLLQ     ALFPLGDVDLLDAYHLCGGRVVTFR   AARSPTPSEAA  G+SGDG++PF GQGH R+ EGD  SKVVSAGSLRKDKATT+ DT GADRACGWE+GELEEE    VVVDEMLPRLVRIFGKALKRRLPALHGHLCKEA+PMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLK LNG+EILLQYGNLTANVSFQEVLRC LATQ
Sbjct:    1 MSARYNLSEEGKEDSSDEGDHETWSPGKRVSRTRHYSSCILRQALPTTSPIKLRHCQQTSNCNGEPDEEQDSRNDNSTHSNTSEQSTCSGTYSSDEEPASRRKNIWGGDTGATIMAERGQHHGDDGDIALVAAPVHASSPLLSLPGPPSPRSRKQAGKVLGSSAVMNRDHTLSVSSQARDPAPLSPSPQPVAVFRSRNSNYTPTSQPNHHSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGETLVLKQAWSDCAADSGMFAHSMLVSNVPGKVDDDQARVLDPWLDGRLSSSGLIKVRAVGLERDHATMTVRTRQGNILNGAPSPPSESRGRVVGVLELDEGDILVRVDNVQ--------------------------------------------------------------------------------PPNASCVGRLVSSPSPKIETEADGCPVAVILRARRQLRSGGMEQWYEAVASRRRLWQRLLRNLSPDSHSDRAKLRKLVVCSRSADGHALKG---LVKCKLRNNYQRLISSRKGLRKSSNTDGCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALVLVQEPVEAMAYATLVTLLQ-----ALFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEAAARGESGDGQYPFPGQGHLRMAEGDTRSKVVSAGSLRKDKATTIRDTDGADRACGWEIGELEEE----VVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAVPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKTLNGLEILLQYGNLTANVSFQEVLRCALATQ 797          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: D7FQL0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL0_ECTSI)

HSP 1 Score: 1311 bits (3392), Expect = 0.000e+0
Identity = 704/906 (77.70%), Postives = 745/906 (82.23%), Query Frame = 0
Query:   42 MSARCNLSQEGKEDDSDEGGHETWSPGKRVSRTRHFSSCILRQALPTTSPIKLRHCQQTSNCS-GEADEEQDSRNDN-STHSNTSETTCNGTYSSDEEPASRRENIWGGEIGATIMAEKEQHHGG------AAPVHASSPVLSLPGPPSPRSREQAGKVSGSSAVMIRDHTFSVSPQARDSAPLSLSLQPVAVFRSRNSNYTPTSQRNRHSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGETFVLKQAWSDCAADSGMFAHSMLVSNLPGKVDDDQAGVLDVRLDGRSSSSGLIKVRAVGLERDHVTMTVRTRQGSILNGVPSPPNDSRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQAKRPIRLTFVRHACGRRFVGRDHGYGGGGTCRGAARQQPPFRIANCGGWDRCCGMMGKSGCGGKQPPNASCVGRLVSSPLPKIETEADGCPVAVILRARRQLRSGGIEQWCEVVASRRRLWQRLLRNLSPDSHSDRAKLRKLVGCSRSVDEHALKGRTGLVKRTLRNNYQRLISSRKGARKGSNTNGCNKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALALVQEPVEAMAYATLATLLQDRVMQALFPLGDVDLLDAYHLCGGRVVTFRTLSAARSPTPSEAAPTGKSGDGRHPFRGQGHRRIVEGDACSKVVSAGSLRKDKATTMCDTGGADRACGWEMGELEEEPTRQVVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQSTRVSMGQRRSARHFVL 939
            MSARCNLS+EGKEDDSDEG HETW PGKRVSRTR +SSCILRQALPTTSPIKLRHC QTSNC+ GEADEEQ  R+DN STHS TSE+T +GT +SDEEP S+RENIWGG+ GATIM E+ QH         AAPVHASSP+LSLPGPP PRSREQAGK S SS VMIRDHTFSVSPQARDSAPLSLS QPVAVFRSRNSNYT +SQ ++HSSTAIHEPRARCGCRGLTVR+DSGPLGLSLEASYRVGET VLKQAWSDCAADSGMFAHSMLVSN PGKVDDDQ  VLD+ LDGRSSSSGLIKVRAVGLER+H T TV TRQGS+LNG PSPPN+SRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQA+RP RLTFVRHACGRRFVGRD+GYGGGGTCRGAAR +PP R+A CGGWD CCGMMGKSGCGGKQPPNASCVGR+VSSP PKIETEADGCPVAVILRARRQLRSGG+EQW E+VASR  LWQRLLRNLSPDSHSDR+                                                                                       GGGGHVCPAHFAGG+KHAVFRVAFATASTLQFVSG+SYMAAL LVQEP+EAMAYATL TLLQ+RVMQALFPLGDVDLLDAYHLCGGRVVTFR   AARSPTPSE A  GKSGDG++PFRGQGHRR+ EGD  SKVVSAGS R+DKATT+ DTGGADRACGW+MGELEEE    VVV EMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNG+EILLQYGNLTANVSFQEVLRC LATQSTRVSMG  + +   +L
Sbjct:    1 MSARCNLSEEGKEDDSDEGDHETWFPGKRVSRTRQYSSCILRQALPTTSPIKLRHCPQTSNCNYGEADEEQGFRDDNNSTHSYTSESTRSGTCNSDEEPESKRENIWGGDTGATIMVERGQHGDDGDIALVAAPVHASSPLLSLPGPPGPRSREQAGKASSSSTVMIRDHTFSVSPQARDSAPLSLSPQPVAVFRSRNSNYTRSSQ-HKHSSTAIHEPRARCGCRGLTVRIDSGPLGLSLEASYRVGETIVLKQAWSDCAADSGMFAHSMLVSNFPGKVDDDQVRVLDLGLDGRSSSSGLIKVRAVGLERNHATTTVHTRQGSMLNGAPSPPNESRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQAERPTRLTFVRHACGRRFVGRDNGYGGGGTCRGAARHKPPCRVAYCGGWDGCCGMMGKSGCGGKQPPNASCVGRVVSSPSPKIETEADGCPVAVILRARRQLRSGGMEQWHELVASRGHLWQRLLRNLSPDSHSDRS---------------------------------------------------------------------------------------GGGGHVCPAHFAGGAKHAVFRVAFATASTLQFVSGISYMAALVLVQEPLEAMAYATLVTLLQERVMQALFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEPAARGKSGDGQYPFRGQGHRRMAEGDTRSKVVSAGSPREDKATTIRDTGGADRACGWQMGELEEE----VVVGEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGLEILLQYGNLTANVSFQEVLRCALATQSTRVSMGATKISTTLLL 814          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A421EX14_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EX14_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.610e-7
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 0
Query:  817 FGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQ 922
            F +   R LP LH HL  +   +     EWFTT ++ +T   LA    DLF V L DV +R+GLAIL++L   L  ++  + L ++  L   +   +V+   LA Q
Sbjct:   49 FEQMFIRDLPKLHAHLMVQGFAVPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGLQDVFLRVGLAILKLLEAKLMCMSFEDFLREFKPLVRELDPYQVILQALALQ 154          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A3F2S3X1_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3X1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.110e-5
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0
Query:  810 LPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQY 902
            L   ++ F +   R LP LH HL  +   +     EWFTT ++ +T   LA    DLF V L DV +R+GLAIL++L   L  ++  + L ++
Sbjct:  178 LDEYLQHFEQMFIRDLPKLHAHLMVQGFTVPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGLQDVFLRVGLAILKLLEAKLMCMSFEDFLREF 270          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: K3WQH6_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQH6_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 6.420e-5
Identity = 35/129 (27.13%), Postives = 63/129 (48.84%), Query Frame = 0
Query:  817 FGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVLRCTLATQSTRVSMGQRRSA----RHFVLQS 941
            F    +R LP LH H+  +   +     EWFTT ++ +T   LA    DLF V + D+ +R+GLAIL++L   L  +   + L ++  L   +   + +   L+ +   +  G+  +A     H++L +
Sbjct:  185 FNLMFQRELPDLHQHILSQGFVIPMYGIEWFTTLFSLSTKADLACAIFDLFFVGVQDIFLRMGLAILKLLESKLMCMTFEDFLREFKPLVRQIDPYQAIFQALSFRPNPLVRGEDTTAYISRAHYLLSA 313          
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Match: A0A662WPF7_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPF7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.040e-5
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 0
Query:  810 LPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILLQYGNLTANVSFQEVL 915
            L   ++ F    +R LP LH HL  +   +     EWFTT ++ +T   LA    DLF V + D+ +R+GLAIL++L   L  +   + L ++  L   +   +V+
Sbjct:  195 LDEYLQHFEVMFRRDLPKLHAHLLAQGFALPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGVQDIFLRVGLAILKLLEAKLMCMTCEDFLREFKLLVRELDPYQVI 300          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig171.5041.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L6Q0_9PHAE0.000e+080.43Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7FQL0_ECTSI0.000e+077.70Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A421EX14_9STRA5.610e-734.91Rab-GAP TBC domain-containing protein n=2 Tax=Phyt... [more]
A0A3F2S3X1_9STRA3.110e-535.48Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
K3WQH6_GLOUD6.420e-527.13Rab-GAP TBC domain-containing protein n=1 Tax=Glob... [more]
A0A662WPF7_9STRA8.040e-531.13Rab-GAP TBC domain-containing protein n=2 Tax=Noth... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainSMARTSM00164tbc_4coord: 531..894
e-value: 0.003
score: -6.4
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 809..888
e-value: 1.9E-10
score: 40.8
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 517..871
score: 11.186
NoneNo IPR availableGENE3D1.10.472.80coord: 804..940
e-value: 5.1E-18
score: 67.2
NoneNo IPR availableGENE3D2.30.42.10coord: 257..422
e-value: 4.6E-5
score: 25.2
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 810..901
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 378..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig171contigEcto-sp13_S_contig171:14505..21821 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig171.5041.1mRNA_Ecto-sp13_S_contig171.5041.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig171 14505..21821 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig171.5041.1 ID=prot_Ecto-sp13_S_contig171.5041.1|Name=mRNA_Ecto-sp13_S_contig171.5041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=957bp
MSLREPRRELRVQWANEAEGLPISDPLKSVDHDHHDYHAVVMSARCNLSQ
EGKEDDSDEGGHETWSPGKRVSRTRHFSSCILRQALPTTSPIKLRHCQQT
SNCSGEADEEQDSRNDNSTHSNTSETTCNGTYSSDEEPASRRENIWGGEI
GATIMAEKEQHHGGAAPVHASSPVLSLPGPPSPRSREQAGKVSGSSAVMI
RDHTFSVSPQARDSAPLSLSLQPVAVFRSRNSNYTPTSQRNRHSSTAIHE
PRARCGCRGLTVRVDSGPLGLSLEASYRVGETFVLKQAWSDCAADSGMFA
HSMLVSNLPGKVDDDQAGVLDVRLDGRSSSSGLIKVRAVGLERDHVTMTV
RTRQGSILNGVPSPPNDSRGSVVGVLELDEGDILVRVDNVQVTKKSFTEV
ASLLDQAKRPIRLTFVRHACGRRFVGRDHGYGGGGTCRGAARQQPPFRIA
NCGGWDRCCGMMGKSGCGGKQPPNASCVGRLVSSPLPKIETEADGCPVAV
ILRARRQLRSGGIEQWCEVVASRRRLWQRLLRNLSPDSHSDRAKLRKLVG
CSRSVDEHALKGRTGLVKRTLRNNYQRLISSRKGARKGSNTNGCNKAKRA
LAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVF
RVAFATASTLQFVSGMSYMAALALVQEPVEAMAYATLATLLQDRVMQALF
PLGDVDLLDAYHLCGGRVVTFRTLSAARSPTPSEAAPTGKSGDGRHPFRG
QGHRRIVEGDACSKVVSAGSLRKDKATTMCDTGGADRACGWEMGELEEEP
TRQVVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTA
YARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGMEILL
QYGNLTANVSFQEVLRCTLATQSTRVSMGQRRSARHFVLQSAWPLGVKVV
VAFGRST
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf
IPR036034PDZ_sf