mRNA_Ecto-sp13_S_contig17061.5024.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17061.5024.1
Unique NamemRNA_Ecto-sp13_S_contig17061.5024.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17061.5024.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 8.590e-47
Identity = 104/117 (88.89%), Postives = 104/117 (88.89%), Query Frame = 1 
Query:    1 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXX-------SATGVAHVPRPGLIRFLYERCLFPPASREP 330
            STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXX             SATGVAHVPRPGLIRFLYERCLFPPASREP
Sbjct: 2407 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXXGSCSSWAAAGVAASATGVAHVPRPGLIRFLYERCLFPPASREP 2523
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BLAST of mRNA_Ecto-sp13_S_contig17061.5024.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.050e-46
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXX-SATGVAHVPRPGLIRFLYERCLFPPASREP 330
            STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAV+GSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXX SATGVA VPRPGLIRFLYERCLFPPASREP
Sbjct: 1406 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVAGSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXXXSATGVARVPRPGLIRFLYERCLFPPASREP 1516
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17061.5024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI8.590e-4788.89Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE4.050e-4697.30USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17061contigEcto-sp13_S_contig17061:1101..2008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score171.4
Seed ortholog evalue2.7e-40
Seed eggNOG ortholog2880.D8LU88
Model size376
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
Cds size375
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.5226316-CDS-Ecto-sp13_S_contig17061:1100..11741681462893.5226316-CDS-Ecto-sp13_S_contig17061:1100..1174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17061 1101..1174 +
1681462893.5345619-CDS-Ecto-sp13_S_contig17061:1706..20071681462893.5345619-CDS-Ecto-sp13_S_contig17061:1706..2007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17061 1707..2007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17061.5024.1prot_Ecto-sp13_S_contig17061.5024.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17061 1101..2007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17061.5024.1

>prot_Ecto-sp13_S_contig17061.5024.1 ID=prot_Ecto-sp13_S_contig17061.5024.1|Name=mRNA_Ecto-sp13_S_contig17061.5024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRR
KRLAETLFSRLSSSSSSGSCSSWAAAGAAASATGVAHVPRPGLIRFLYER
CLFPPASREPSPPRPPLRAGGNGRP
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mRNA from alignment at Ecto-sp13_S_contig17061:1101..2008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17061.5024.1 ID=mRNA_Ecto-sp13_S_contig17061.5024.1|Name=mRNA_Ecto-sp13_S_contig17061.5024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17061:1101..2008+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACTGCCGCGGAGTGGCTCTTGGAGGAGGCGGCGAGGCGGCTTGCCGC
TCACGAGTTCACCGAGACGTTCGAGTGAGTTACGACTGCCAAGATTTAGA
GAGCGGTACAGCTGCCGCTGCTGCTGCTGCTGCTACTGGTTCTGCTGCTG
CTGCTCTTGTTCCGTTGTAGCATATGCGCCTGGCCAACCAACGCGAGCGT
TAGAAGCCTCGGTTTGTGTCCGGGTGCGAACCGCGTCACTTACGCTCTGG
AGAGCGTGTGGTGGCACCTAGCTATGTAGCTAGGCGTCTGGTGCCGTCTT
CTGTTGTTCAGTGTTTACCAGCACGGTGCTGCCTGGCAGAACGAACCCGC
AGCAGCAGCAGCAGCAAGAGCAGTTAGTGGGTTATTGGCACCTTCGCCGG
GGGCCCTCTCCGTTTTTTTCGCTTATTTGTTTTTCGCTTACCGGTCCTTT
ACCGGTCCGCCTTAAACAAGAAGAACAATGTTCCACCACAGCAATGTTCT
GCCACTGCCTCTGCTGTTGCTCTTCCGCATTAAGAACGAGTGACAATGTA
ACACCACCGCTACGTTCGCTTGCTGCTCTTCCCTGCTAACAACACATAAA
AAAAAGGTCGGATGCGCCGGACCACGTGCTCATCACCCTCCTCCACGCGC
TGACGGTTGCGGTGTCGGGCTCCCCCCGCCGGAAACGCCTCGCGGAGACG
CTCTTCTCTCGCCTGTCTTCTTCCTCCTCCTCCGGTTCTTGCTCTTCCTG
GGCCGCCGCGGGTGCTGCCGCTAGCGCCACTGGCGTTGCCCATGTCCCCC
GCCCGGGACTGATACGCTTCTTGTACGAGAGGTGCTTGTTCCCGCCCGCC
TCCCGAGAGCCGTCGCCGCCGCGGCCGCCACTACGGGCCGGAGGGAACGG
CAGGCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17061:1101..2008+

>mRNA_Ecto-sp13_S_contig17061.5024.1 ID=mRNA_Ecto-sp13_S_contig17061.5024.1|Name=mRNA_Ecto-sp13_S_contig17061.5024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17061:1101..2008+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACTGCCGCGGAGTGGCTCTTGGAGGAGGCGGCGAGGCGGCTTGCCGC
TCACGAGTTCACCGAGACGTTCGAGTCGGATGCGCCGGACCACGTGCTCA
TCACCCTCCTCCACGCGCTGACGGTTGCGGTGTCGGGCTCCCCCCGCCGG
AAACGCCTCGCGGAGACGCTCTTCTCTCGCCTGTCTTCTTCCTCCTCCTC
CGGTTCTTGCTCTTCCTGGGCCGCCGCGGGTGCTGCCGCTAGCGCCACTG
GCGTTGCCCATGTCCCCCGCCCGGGACTGATACGCTTCTTGTACGAGAGG
TGCTTGTTCCCGCCCGCCTCCCGAGAGCCGTCGCCGCCGCGGCCGCCACT
ACGGGCCGGAGGGAACGGCAGGCCG
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