prot_Ecto-sp13_S_contig17061.5024.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17061.5024.1
Unique Nameprot_Ecto-sp13_S_contig17061.5024.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length125
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17061.5024.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 8.590e-47
Identity = 104/117 (88.89%), Postives = 104/117 (88.89%), Query Frame = 0 
Query:    1 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXX-------SATGVAHVPRPGLIRFLYERCLFPPASREP 110
            STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXX             SATGVAHVPRPGLIRFLYERCLFPPASREP
Sbjct: 2407 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXXGSCSSWAAAGVAASATGVAHVPRPGLIRFLYERCLFPPASREP 2523
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BLAST of mRNA_Ecto-sp13_S_contig17061.5024.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.050e-46
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0 
Query:    1 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXX-SATGVAHVPRPGLIRFLYERCLFPPASREP 110
            STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAV+GSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXX SATGVA VPRPGLIRFLYERCLFPPASREP
Sbjct: 1406 STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVAGSPRRKRLAETLFSRLSSSXXXXXXXXXXXXXXXXXSATGVARVPRPGLIRFLYERCLFPPASREP 1516
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17061.5024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI8.590e-4788.89Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE4.050e-4697.30USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17061contigEcto-sp13_S_contig17061:1101..2007 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17061.5024.1mRNA_Ecto-sp13_S_contig17061.5024.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17061 1101..2008 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17061.5024.1 ID=prot_Ecto-sp13_S_contig17061.5024.1|Name=mRNA_Ecto-sp13_S_contig17061.5024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
STAAEWLLEEAARRLAAHEFTETFESDAPDHVLITLLHALTVAVSGSPRR
KRLAETLFSRLSSSSSSGSCSSWAAAGAAASATGVAHVPRPGLIRFLYER
CLFPPASREPSPPRPPLRAGGNGRP
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