mRNA_Ecto-sp13_S_contig17058.5020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.950e-32 Identity = 93/275 (33.82%), Postives = 149/275 (54.18%), Query Frame = 2
Query: 14 MHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMIT-EPSALVCPAYENTTTAFQASCSSLFPGD---VDIFLAANSKDLARECIDEMAVDGFHGVQIDLGGN---THTHFDNDDDPNV-ALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
++ + FSDG L+LS+ Q L + ++L E+ V+E S+R L + +++ P E CAWNMLL RSP+++ L +PW + P D YVAWH+RT D G+ +N +H Y++ + S V P + + T A + C +F D + +++++NSK +AR C A +DLG + HT F + PN AL+AF D+++LMD++VI++TGSSFS VA ++ + CR V+ P + +C+P D
Sbjct: 288 LYPLKFSDGNLVLSSQQLEALAIQTGIPDTSLAEMAVAVKER-WSSLRRLSQAIAG---SAVVPP-ETCAWNMLLRRSPSMIASLEAHNPW---TPSGFGPRPKD-YVAWHVRTSD-GESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKN--PNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHD 550
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.100e-30 Identity = 95/279 (34.05%), Postives = 145/279 (51.97%), Query Frame = 2
Query: 8 NGMHSMVFSDGALILSNDQFLRLK----LALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMITE-PSALVCPAYENTTTAFQASCSSLF---PGDVDIFLAANSKDLARECIDEMAVDGFHGVQIDLG---GNTHTHFDNDDDPNVA-LSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVP 805
+G H F DG ++L + Q L +A+Q + +L+L + PV+ + G L + LP S +PC WNM + RS A++ RL +PW+ V G S+S Y+A+ +RT + G+ ++ IH Y+ S +VC Y T + +C + F GDV +F+++NS +AR C E A +D+G G+ HT F P +A L AF DF+F++DA V+VRT SSFSG ++GM+C +V P G +CVP
Sbjct: 315 SGFHLFRFYDGFMVLCDHQLTMLASKVGIAIQHPDAMMLQLKKVF---PVKIRYWISGGLQNGLPAS-----QPCTWNMFVRRSAAMMRRLEAYNPWR-VEGSSMSRF--QKYIAFQIRTTE-GETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAH--PKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGLYVCVP 579
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE) HSP 1 Score: 123 bits (308), Expect = 7.880e-30 Identity = 74/209 (35.41%), Postives = 120/209 (57.42%), Query Frame = 2
Query: 209 VEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMIT-EPSALVCPAYENTTTAFQASCSSLFPGDVDI---FLAANSKDLARECIDEMAVDGFHGVQIDLG---GNTHTHFDNDDDPNVALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
++ CAWNMLL RS +++ L +PW S P YVAWH+RT + G+ E ++ +H+Y+ + SA V P + + T+ + +C L+ ++ I ++++NSK ++R C A + +DLG + HT + + D AL+AF D+++LMD+++IV+TGSSF+ VA+I+G SCR T P R IC+P D
Sbjct: 16 LQACAWNMLLRRSHSIMASLDANNPWTPAGFGSR----PAEYVAWHIRTSN-GETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDAT-ALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLPND 218
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE) HSP 1 Score: 125 bits (313), Expect = 4.080e-29 Identity = 93/282 (32.98%), Postives = 148/282 (52.48%), Query Frame = 2
Query: 5 ANGMHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHP-PDAYVAWHMRTVDPGDRIEGYNASIHKYMI-TEPSALVCPAYENTTTAFQASCSSLFPGDVDI---FLAANSKDLAREC-IDEMAVDGFHGVQ---IDLG---GNTHTHFDNDDDPNVALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
A ++ F DG ++LS+ Q + + G+++ E+ + ++E S +G L + + V PCAWNMLL RSPA++ L +PW + ++P P YVAWH+RT G+ + +H Y+ + S V P + + T A + C F DV I ++++NSK +AR C + + H V +DLG + HT F + AL+AF D+++LMD+++IV+TGSSFS VA+I+GMSC V P + +C+P D
Sbjct: 99 AERLYPFTFPDGQMVLSHWQLETIARKVGLPGTSVDEMAAALEEG--YSKIGGLGRLSRETVQNERFSVLPCAWNMLLRRSPAMMASLEAHNPWMTHE-----FNPRPKKYVAWHIRT-SHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKAT-ALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLPAD 371
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE) HSP 1 Score: 117 bits (293), Expect = 8.870e-27 Identity = 84/254 (33.07%), Postives = 129/254 (50.79%), Query Frame = 2
Query: 5 ANGMHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMITE-PSALVCPAYENTTTAFQASCSSLFPG-DVDIFLAANSKDLARECIDEMAVDGFHGVQIDLGGNT---HTHFDNDDDPNVALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSC 751
A H++ F DG LI+S+ Q + + T + + ++A R + + L AP PCAWNM+L RSP ++ + +PW + +GDS H Y AWH+RT + G+ + S +Y+ S +CP + +T A + +C S F G D +++++NSK AR C E +DLG N HT F + P+ ++AF DF++LMDA +IVRT SSFSG + I+ C
Sbjct: 47 AEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSGIKAGFRKAFKNRWRHYLATANLDL----AP---PCAWNMVLRRSPTMMNSMEAHTPWVT-AGDSPRAHAH--YHAWHIRTSE-GETERSF--SKQRYIFNNVASQSICPMFVSTREASEEACPSRFSGNDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKN--PDTVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRC 285
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 7.540e-10 Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 2
Query: 509 FLAANSKDLARECIDEMAVDGFHGVQIDLGGN---THTHFDNDDDPNV-ALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
F + SK +AR C A +DLG + HT F + PN AL+AF D+++LMD++VI++TGSSFS VA ++ + CR V+ P + +C+P D
Sbjct: 5 FFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKN--PNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHD 108
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 6.460e-7 Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 2
Query: 215 PCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMITE-PSALVCPAYENTTTAFQASCSSLFPG-DVDIFLAAN 523
PCAWNM+L RSP ++ + +PW +V GDS Y AWH+RT + G+ + S +Y+ S +CP + +T A + +C S F G D +++++N
Sbjct: 41 PCAWNMVLRRSPTMMNSMEAHTPWVTV-GDSPRTRAH--YHAWHIRTSE-GETERSF--SKQRYIFNNVASESICPMFVSTREASEEACPSRFSGKDSPVYISSN 139 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17058.5020.1 >prot_Ecto-sp13_S_contig17058.5020.1 ID=prot_Ecto-sp13_S_contig17058.5020.1|Name=mRNA_Ecto-sp13_S_contig17058.5020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp MHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSLback to top mRNA from alignment at Ecto-sp13_S_contig17058:240..1809- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17058.5020.1 ID=mRNA_Ecto-sp13_S_contig17058.5020.1|Name=mRNA_Ecto-sp13_S_contig17058.5020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17058:240..1809- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17058:240..1809- >mRNA_Ecto-sp13_S_contig17058.5020.1 ID=mRNA_Ecto-sp13_S_contig17058.5020.1|Name=mRNA_Ecto-sp13_S_contig17058.5020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17058:240..1809- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |