mRNA_Ecto-sp13_S_contig17058.5020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17058.5020.1
Unique NamemRNA_Ecto-sp13_S_contig17058.5020.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.950e-32
Identity = 93/275 (33.82%), Postives = 149/275 (54.18%), Query Frame = 2
Query:   14 MHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMIT-EPSALVCPAYENTTTAFQASCSSLFPGD---VDIFLAANSKDLARECIDEMAVDGFHGVQIDLGGN---THTHFDNDDDPNV-ALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
            ++ + FSDG L+LS+ Q   L +      ++L E+   V+E    S+R L   +     +++ P  E CAWNMLL RSP+++  L   +PW   +       P D YVAWH+RT D G+    +N  +H Y++  + S  V P + + T A +  C  +F  D   + +++++NSK +AR C    A        +DLG +    HT F  +  PN  AL+AF D+++LMD++VI++TGSSFS  VA ++ + CR V+     P +   +C+P D
Sbjct:  288 LYPLKFSDGNLVLSSQQLEALAIQTGIPDTSLAEMAVAVKER-WSSLRRLSQAIAG---SAVVPP-ETCAWNMLLRRSPSMIASLEAHNPW---TPSGFGPRPKD-YVAWHVRTSD-GESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKN--PNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHD 550          
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.100e-30
Identity = 95/279 (34.05%), Postives = 145/279 (51.97%), Query Frame = 2
Query:    8 NGMHSMVFSDGALILSNDQFLRLK----LALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMITE-PSALVCPAYENTTTAFQASCSSLF---PGDVDIFLAANSKDLARECIDEMAVDGFHGVQIDLG---GNTHTHFDNDDDPNVA-LSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVP 805
            +G H   F DG ++L + Q   L     +A+Q   + +L+L  +    PV+    + G L + LP S     +PC WNM + RS A++ RL   +PW+ V G S+S      Y+A+ +RT + G+    ++  IH Y+     S +VC  Y   T   + +C + F    GDV +F+++NS  +AR C  E A        +D+G   G+ HT F     P +A L AF DF+F++DA V+VRT SSFSG    ++GM+C     +V  P  G  +CVP
Sbjct:  315 SGFHLFRFYDGFMVLCDHQLTMLASKVGIAIQHPDAMMLQLKKVF---PVKIRYWISGGLQNGLPAS-----QPCTWNMFVRRSAAMMRRLEAYNPWR-VEGSSMSRF--QKYIAFQIRTTE-GETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAH--PKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGLYVCVP 579          
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.880e-30
Identity = 74/209 (35.41%), Postives = 120/209 (57.42%), Query Frame = 2
Query:  209 VEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMIT-EPSALVCPAYENTTTAFQASCSSLFPGDVDI---FLAANSKDLARECIDEMAVDGFHGVQIDLG---GNTHTHFDNDDDPNVALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
            ++ CAWNMLL RS +++  L   +PW      S     P  YVAWH+RT + G+  E ++  +H+Y+   + SA V P + + T+  + +C  L+  ++ I   ++++NSK ++R C    A +      +DLG    + HT +  + D   AL+AF D+++LMD+++IV+TGSSF+  VA+I+G SCR    T   P R   IC+P D
Sbjct:   16 LQACAWNMLLRRSHSIMASLDANNPWTPAGFGSR----PAEYVAWHIRTSN-GETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDAT-ALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLPND 218          
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.080e-29
Identity = 93/282 (32.98%), Postives = 148/282 (52.48%), Query Frame = 2
Query:    5 ANGMHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHP-PDAYVAWHMRTVDPGDRIEGYNASIHKYMI-TEPSALVCPAYENTTTAFQASCSSLFPGDVDI---FLAANSKDLAREC-IDEMAVDGFHGVQ---IDLG---GNTHTHFDNDDDPNVALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
            A  ++   F DG ++LS+ Q   +   +   G+++ E+ + ++E    S    +G L  +   +    V PCAWNMLL RSPA++  L   +PW +       ++P P  YVAWH+RT   G+    +   +H Y+   + S  V P + + T A +  C   F  DV I   ++++NSK +AR C +    +   H V    +DLG    + HT F  +     AL+AF D+++LMD+++IV+TGSSFS  VA+I+GMSC  V      P +   +C+P D
Sbjct:   99 AERLYPFTFPDGQMVLSHWQLETIARKVGLPGTSVDEMAAALEEG--YSKIGGLGRLSRETVQNERFSVLPCAWNMLLRRSPAMMASLEAHNPWMTHE-----FNPRPKKYVAWHIRT-SHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKAT-ALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLPAD 371          
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 8.870e-27
Identity = 84/254 (33.07%), Postives = 129/254 (50.79%), Query Frame = 2
Query:    5 ANGMHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSLVGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMITE-PSALVCPAYENTTTAFQASCSSLFPG-DVDIFLAANSKDLARECIDEMAVDGFHGVQIDLGGNT---HTHFDNDDDPNVALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSC 751
            A   H++ F DG LI+S+ Q   +  +      T   + +  ++A     R  +   +  L    AP   PCAWNM+L RSP ++  +   +PW + +GDS   H    Y AWH+RT + G+    +  S  +Y+     S  +CP + +T  A + +C S F G D  +++++NSK  AR C  E          +DLG N    HT F  +  P+  ++AF DF++LMDA +IVRT SSFSG +  I+   C
Sbjct:   47 AEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSGIKAGFRKAFKNRWRHYLATANLDL----AP---PCAWNMVLRRSPTMMNSMEAHTPWVT-AGDSPRAHAH--YHAWHIRTSE-GETERSF--SKQRYIFNNVASQSICPMFVSTREASEEACPSRFSGNDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKN--PDTVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRC 285          
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.540e-10
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  509 FLAANSKDLARECIDEMAVDGFHGVQIDLGGN---THTHFDNDDDPNV-ALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVDGTVLTP-RGFQICVPRD 811
            F  + SK +AR C    A        +DLG +    HT F  +  PN  AL+AF D+++LMD++VI++TGSSFS  VA ++ + CR V+     P +   +C+P D
Sbjct:    5 FFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKN--PNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHD 108          
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.460e-7
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  215 PCAWNMLLSRSPALLERLAELSPWKSVSGDSLSYHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMITE-PSALVCPAYENTTTAFQASCSSLFPG-DVDIFLAAN 523
            PCAWNM+L RSP ++  +   +PW +V GDS        Y AWH+RT + G+    +  S  +Y+     S  +CP + +T  A + +C S F G D  +++++N
Sbjct:   41 PCAWNMVLRRSPTMMNSMEAHTPWVTV-GDSPRTRAH--YHAWHIRTSE-GETERSF--SKQRYIFNNVASESICPMFVSTREASEEACPSRFSGKDSPVYISSN 139          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17058.5020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JA60_9PHAE4.950e-3233.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS37_9PHAE1.100e-3034.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUR5_9PHAE7.880e-3035.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z7_9PHAE4.080e-2932.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ4_9PHAE8.870e-2733.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBZ2_9PHAE7.540e-1037.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5J4_ECTSI6.460e-734.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17058contigEcto-sp13_S_contig17058:240..1809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1050
Hectar predicted targeting categoryother localisation
Exons3
Cds size813
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.30304-UTR-Ecto-sp13_S_contig17058:239..4631681462893.30304-UTR-Ecto-sp13_S_contig17058:239..463Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17058 240..463 -
1681462893.342824-UTR-Ecto-sp13_S_contig17058:1796..18091681462893.342824-UTR-Ecto-sp13_S_contig17058:1796..1809Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17058 1797..1809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.313832-CDS-Ecto-sp13_S_contig17058:463..7641681462893.313832-CDS-Ecto-sp13_S_contig17058:463..764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17058 464..764 -
1681462893.323702-CDS-Ecto-sp13_S_contig17058:1056..13351681462893.323702-CDS-Ecto-sp13_S_contig17058:1056..1335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17058 1057..1335 -
1681462893.3324127-CDS-Ecto-sp13_S_contig17058:1563..17961681462893.3324127-CDS-Ecto-sp13_S_contig17058:1563..1796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17058 1564..1796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17058.5020.1prot_Ecto-sp13_S_contig17058.5020.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17058 464..1796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17058.5020.1

>prot_Ecto-sp13_S_contig17058.5020.1 ID=prot_Ecto-sp13_S_contig17058.5020.1|Name=mRNA_Ecto-sp13_S_contig17058.5020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
MHSMVFSDGALILSNDQFLRLKLALQADGSTLLELMSLVQEAPVRSMRSL
VGVLDSKLPTSIAPRVEPCAWNMLLSRSPALLERLAELSPWKSVSGDSLS
YHPPDAYVAWHMRTVDPGDRIEGYNASIHKYMITEPSALVCPAYENTTTA
FQASCSSLFPGDVDIFLAANSKDLARECIDEMAVDGFHGVQIDLGGNTHT
HFDNDDDPNVALSAFFDFVFLMDATVIVRTGSSFSGMVATIRGMSCRRVD
GTVLTPRGFQICVPRDLSCE*
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mRNA from alignment at Ecto-sp13_S_contig17058:240..1809-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17058.5020.1 ID=mRNA_Ecto-sp13_S_contig17058.5020.1|Name=mRNA_Ecto-sp13_S_contig17058.5020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17058:240..1809- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTGCAAATGGAATGCACTCAATGGTATTCAGCGACGGGGCGCTGATCC TCTCTAATGATCAGTTTTTGCGGTTGAAGTTGGCTCTCCAGGCGGACGGC AGCACGCTCCTCGAACTGATGTCGTTGGTGCAAGAGGCGCCAGTGCGGTC CATGAGGTCCCTGGTCGGCGTGCTGGATTCGAAACTTCCGACTTCGATCG CACCCCGTGTGGAGCCGTGCGCCTGGAACATGTTGCTGAGTCGAAGGTGG GTCATGCTCAACAGCCATTAGTGCTACCGCTCCGGCAGCTGGCGACGAAA TCACAGAGGGATCACCTGGCGCTATTCACGCTGTGTTTCTGCACGCTCGC AAATGCGTGTTGCCTGCGCTAGAATCGGTCTTCCGTCCAACCTTGGGGGG TTTGAACCGTATCCTACATGTAGTATGTGGTCTCTATCGCCAGAAGCATC CGCCCTACACGTTTCCGCTGGCAGCCCTGCCCTCCTCGAAAGGCTAGCGG AGCTATCTCCCTGGAAATCAGTGAGCGGAGACTCGCTCTCATACCATCCG CCAGATGCGTACGTGGCATGGCACATGAGGACTGTGGACCCAGGAGATAG AATTGAGGGCTACAACGCGAGCATTCACAAGTACATGATCACCGAGCCTT CAGCATTGGTCTGCCCGGCATATGAAAACACCACAACTGCATTCCAGGCG TCTTGCTCGAGCCTGTTCCCTGGAGACGTCGACATTTTTCTCGCCGCCAA CAGGTTTGAAAATGTATTCCTCTTGTCTTCCTCCGGAATCAGTGTGTTGG GATGCGTTTGATTTCTCCATTTCTGCACTACCACATTTGCCGCCGACCTC CATCATGCGACCCAGTTCTGCTCTCGCTTGTCTGCATGTGCCCGCAGTTC CATCAAGACGACTCTCCTACGTAAAAGAGTAGAGGTAACGAGAGAATCAC TCTATTACACTGTACCTTCAGAAAGATATTGACTGATGTTTGCCCCTCGC GCCCGACCCCGCCTTCTCTGCGTAATAAATCGCCCCCACTGACAGCAAGG ACCTGGCGCGCGAGTGCATCGACGAAATGGCGGTCGACGGCTTTCACGGC GTTCAAATTGATCTGGGGGGCAACACGCACACGCACTTTGACAATGATGA CGACCCGAACGTAGCGTTGAGCGCCTTTTTCGATTTCGTGTTCTTGATGG ATGCCACCGTCATCGTGCGCACTGGCTCGTCATTTTCCGGCATGGTAGCC ACAATCAGAGGCATGTCGTGTAGACGGGTAGACGGCACAGTATTGACGCC GCGTGGTTTCCAGATCTGCGTACCTCGGGATCTGTCTTGCGAGTAGTACA TCGATATTGCGACTGGTTTCGCGTGCTTGCACAATTTTCTTGAATTTTAG TGGGTAGCTTTACTCAAGGCAGAGAACAACCTTATGATGACCTATGACGT CCGGGTGGGAGATTGCCACCTGGGCGGGAACGTTCTGGTAGGAGTTAGCA CACATCATTCGTCTTCAACAAAACCGTTTTCGTGGAGGAAACCCGCATAT AATAGTGTAACAGATCTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17058:240..1809-

>mRNA_Ecto-sp13_S_contig17058.5020.1 ID=mRNA_Ecto-sp13_S_contig17058.5020.1|Name=mRNA_Ecto-sp13_S_contig17058.5020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17058:240..1809- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTCAATGGTATTCAGCGACGGGGCGCTGATCCTCTCTAATGATCA
GTTTTTGCGGTTGAAGTTGGCTCTCCAGGCGGACGGCAGCACGCTCCTCG
AACTGATGTCGTTGGTGCAAGAGGCGCCAGTGCGGTCCATGAGGTCCCTG
GTCGGCGTGCTGGATTCGAAACTTCCGACTTCGATCGCACCCCGTGTGGA
GCCGTGCGCCTGGAACATGTTGCTGAGTCGAAGCCCTGCCCTCCTCGAAA
GGCTAGCGGAGCTATCTCCCTGGAAATCAGTGAGCGGAGACTCGCTCTCA
TACCATCCGCCAGATGCGTACGTGGCATGGCACATGAGGACTGTGGACCC
AGGAGATAGAATTGAGGGCTACAACGCGAGCATTCACAAGTACATGATCA
CCGAGCCTTCAGCATTGGTCTGCCCGGCATATGAAAACACCACAACTGCA
TTCCAGGCGTCTTGCTCGAGCCTGTTCCCTGGAGACGTCGACATTTTTCT
CGCCGCCAACAGCAAGGACCTGGCGCGCGAGTGCATCGACGAAATGGCGG
TCGACGGCTTTCACGGCGTTCAAATTGATCTGGGGGGCAACACGCACACG
CACTTTGACAATGATGACGACCCGAACGTAGCGTTGAGCGCCTTTTTCGA
TTTCGTGTTCTTGATGGATGCCACCGTCATCGTGCGCACTGGCTCGTCAT
TTTCCGGCATGGTAGCCACAATCAGAGGCATGTCGTGTAGACGGGTAGAC
GGCACAGTATTGACGCCGCGTGGTTTCCAGATCTGCGTACCTCGGGATCT
GTCTTGCGAGTAG
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