mRNA_Ecto-sp13_S_contig17047.5016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17047.5016.1
Unique NamemRNA_Ecto-sp13_S_contig17047.5016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17047.5016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17047contigEcto-sp13_S_contig17047:1356..3160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1740
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_002770.1
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.1050186-UTR-Ecto-sp13_S_contig17047:1355..23581681462893.1050186-UTR-Ecto-sp13_S_contig17047:1355..2358Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17047 1356..2358 +
1681462893.1243756-UTR-Ecto-sp13_S_contig17047:2757..28661681462893.1243756-UTR-Ecto-sp13_S_contig17047:2757..2866Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17047 2758..2866 +
1681462893.132746-UTR-Ecto-sp13_S_contig17047:2931..31601681462893.132746-UTR-Ecto-sp13_S_contig17047:2931..3160Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17047 2932..3160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.115346-CDS-Ecto-sp13_S_contig17047:2358..27571681462893.115346-CDS-Ecto-sp13_S_contig17047:2358..2757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17047 2359..2757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17047.5016.1prot_Ecto-sp13_S_contig17047.5016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17047 2359..2757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17047.5016.1

>prot_Ecto-sp13_S_contig17047.5016.1 ID=prot_Ecto-sp13_S_contig17047.5016.1|Name=mRNA_Ecto-sp13_S_contig17047.5016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MVAGVGLEGNKTTRAGPSSEDVMGVTTVTKGMNVLTHQHLNRHSSVFSAD
FLVLPNRPSFFVRVWPSFFFFFTLFSRPLFCPSRVVPCSMHLRGDRLDTA
GGLVGAIRFVLRATDDVAWSLVGAICVVLPRK*
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mRNA from alignment at Ecto-sp13_S_contig17047:1356..3160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17047.5016.1 ID=mRNA_Ecto-sp13_S_contig17047.5016.1|Name=mRNA_Ecto-sp13_S_contig17047.5016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1805bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17047:1356..3160+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGGGTCATTTTCTGTTTCTAGTGTATCAGTCTTGTGCTGCCGTGAGC
TGCCTGTGGGCTTACTGAAAGGGGTTGGTGCGAATAGATCTCTTGCGAAT
AGCGATGTGCAGATGTGTATGATGTGTTTTTTCTGTGCGTGAACCGCCGC
GACCGAAAGACATGGTGTATGATGATGTTGATTCGGCGCGGTTTGATTCC
ATTCGGGAGGGGGAAGGGGGCGCGTCAGACGGGAGCGGTGGACGTACTTG
GCGTTTCGGGAGGACCGTTTTGCTATTTACGAGTGACCTATCTCCCTCGG
GTGTTCCTGTTGTTGTAACGTTCCGTGTTCTGTTGGCAGGGCTGGTCGTT
GTGTCTTGTCTGCTTGCTGCCCCTTGCTGTGAAGAAGAAATAAGAATCCC
CCGATTGCTGCTGTGGTCCATTGTGTCCATCTGATCTGAGATGTTGTGAA
ACTGCTGTCTGTGGTCCTGTTAATTTTCTTGCGTTAGTTAGAGGCGTTTG
TGTTTCTTTTTCTTTTTCGTTTTTTGTCTGTCCTTGCGGTTGGTCGCAAG
CCAATAAACCGCGCTAGGACGCAATATAGCGGTACACACGCCTTCGTGTT
GTGTTTTTTCTTTCTTGTCTTTCCTTGTATGTTCGGAAGCTGCTGGATAT
GTCGCCACACTCGGTAAGTATCCACACCCAGGACGGGGTGGGGGGGGGGA
GGGGGGCAGGAGGAGAGCGAGAGTAAGGGTTCAAATTCTCGCGCTCCGTT
GTCTTTTCGTTGAGGTTCTGTTCTCGGATAAACATGTCGTGTTCCGTTTG
GTTTGGCGAACACTTTTATCTTCTACTTACTTCTCCTTGGATTTTTTCTC
ACCCTTGCTACAATTGTATGGACTTTACCGTATCAGGTGCATATACAATT
CATATACATTATACAGGTTCCGTTTGACTTAGCCAACACCAGGTTTAAAC
GTGCTACAGGAAGTGCCTGTTACTTTAGGTGCCGGAGGAGGGCCAGGGAC
GTTATGGTAGCCGGAGTAGGGCTAGAAGGTAACAAGACAACAAGGGCGGG
GCCATCTTCTGAAGACGTGATGGGCGTGACAACAGTCACGAAGGGGATGA
ACGTGCTCACGCACCAGCATCTCAACCGCCATTCTTCAGTTTTTTCTGCC
GATTTTTTGGTGCTGCCCAATCGTCCGAGTTTTTTTGTGCGTGTCTGGCC
TTCCTTTTTTTTTTTTTTCACCTTGTTTTCGCGGCCTCTTTTTTGCCCCT
CTAGGGTGGTTCCCTGTTCCATGCATTTGCGGGGAGATCGATTGGACACT
GCTGGTGGCCTTGTTGGCGCAATTCGTTTTGTACTACGTGCGACTGATGA
CGTAGCTTGGAGCCTTGTCGGTGCGATCTGTGTTGTACTACCACGCAAGT
AGTCATCACAACAACAAGCACCCGGTTCGGTTCTCGTTGCTCTCTCTGCC
ACGCGCAACGACAGGTCGTGTGGCTGACTACTGTGGCGGTCGCCCGTTTT
GTTTTTTTTTTGCTTCTGGTACGTCGAAGCACGTGCGATGCCACACACAC
GTGGAAGAAGCGTTTTTTTTTTTAAGCCGTTTTAGGCGCGGACGAAAACC
ACGTCCCCAACGTACCACGTTGTGTGTACGCGCGCGCTCCTCTTCTTTGC
TTGCAAGGTTAAGGTTGTGGTACCGGGCAAGAGACGAGGAAGATAAAGCA
ATGAGTCCTTGTAGGACCAGTTCTCGTCGGCAATTTTTAGCGTGTTTTTT
TTATTTAGTCATTTTATATTTGAAGACAGGGGTTTTGCGAGAAAGACCTG
CACCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17047:1356..3160+

>mRNA_Ecto-sp13_S_contig17047.5016.1 ID=mRNA_Ecto-sp13_S_contig17047.5016.1|Name=mRNA_Ecto-sp13_S_contig17047.5016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17047:1356..3160+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGCCGGAGTAGGGCTAGAAGGTAACAAGACAACAAGGGCGGGGCC
ATCTTCTGAAGACGTGATGGGCGTGACAACAGTCACGAAGGGGATGAACG
TGCTCACGCACCAGCATCTCAACCGCCATTCTTCAGTTTTTTCTGCCGAT
TTTTTGGTGCTGCCCAATCGTCCGAGTTTTTTTGTGCGTGTCTGGCCTTC
CTTTTTTTTTTTTTTCACCTTGTTTTCGCGGCCTCTTTTTTGCCCCTCTA
GGGTGGTTCCCTGTTCCATGCATTTGCGGGGAGATCGATTGGACACTGCT
GGTGGCCTTGTTGGCGCAATTCGTTTTGTACTACGTGCGACTGATGACGT
AGCTTGGAGCCTTGTCGGTGCGATCTGTGTTGTACTACCACGCAAGTAG
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