mRNA_Ecto-sp13_S_contig17042.5013.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17042.5013.1
Unique NamemRNA_Ecto-sp13_S_contig17042.5013.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5KE55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE55_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 5.160e-76
Identity = 116/127 (91.34%), Postives = 123/127 (96.85%), Query Frame = -3 
Query:    2 ERGGEEGDIGLDDERYDDFQGNVDNRGSDGAPDIFEPPGHNGGASSARRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 382
            E GGEEGDIGLDDERY+DFQGNVDNRG+DGAP++FEPPGHNGGASSA RLNKLHT+TPSYASSK+VEGGAEKLREN KAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGL+EVLLM YEGEPFDV
Sbjct:  104 ESGGEEGDIGLDDERYNDFQGNVDNRGTDGAPEVFEPPGHNGGASSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQYEGEPFDV 230
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 7.920e-71
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = -3 
Query:    2 ERGGEEGDIGLDDERYDDFQGNVDNRGSDGAPDIFEPPGHNGGASSARRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 382
            E GGEEGDIGLDDERYDDFQGNVDNRG+DGAP++FEPPGHNGGASSA RLNKLHT+TPSYASSK+VEGGAEKLREN KAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGL+EVLLM YEGEPFDV
Sbjct:  120 ESGGEEGDIGLDDERYDDFQGNVDNRGTDGAPEVFEPPGHNGGASSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQYEGEPFDV 246
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 3.970e-70
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = -3 
Query:    2 ERGGEEGDIGLDDERYDDFQGNVDNRGSDGAPDIFEPPGHNGGASSARRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 382
            E GGEEGDIGLDDERYDDFQGNVDNRG+DGAP++FEPPGHNGGASSA RLNKLHT+TPSYASSK+VEGGAEKLREN KAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGL+EVLLM YEGEPFDV
Sbjct:  111 ESGGEEGDIGLDDERYDDFQGNVDNRGTDGAPEVFEPPGHNGGASSAPRLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQYEGEPFDV 237
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 5.110e-61
Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = -3 
Query:    2 GGEEGDIGLDDERYDDFQGNVDNRGSDGAPDI------FEPPGHNGGASSARRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 376
            GGEEGDIGLDDERYDDFQGNVDNRG+DG P++      F PPG NGGASSA RLN LHT+TPSYASSK+VEGGA+KLREN +A  S F PFRTKEQQL+FVWQHVHRISQRAL GL+EVLLM YEGEPFDV
Sbjct:  106 GGEEGDIGLDDERYDDFQGNVDNRGTDGTPEVVLPPEVFLPPGQNGGASSAPRLNWLHTMTPSYASSKTVEGGADKLRENTRAGRSPFDPFRTKEQQLLFVWQHVHRISQRALGGLLEVLLMQYEGEPFDV 236
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 7.590e-48
Identity = 87/125 (69.60%), Postives = 102/125 (81.60%), Query Frame = -3 
Query:    2 GGEEGDIGLDDERYDDFQGNVDNRGSDGAPDIFEPPGHNGGASSARRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 376
            G E  DIGLDDERYDDFQG+VDNRGS   P++F  P   GGASS  RL+ LHT+ PS+AS K+ EGG EKLR N KA+GS FYPF TKEQQL+FVW HVHRIS+RALRGL+E+LL+L+EG+PFDV
Sbjct:  193 GDEHSDIGLDDERYDDFQGDVDNRGSCSEPEVFLLPEDGGGASSVPRLDVLHTMAPSFASCKTAEGGPEKLRHNTKARGSPFYPFATKEQQLLFVWIHVHRISKRALRGLLEILLLLHEGQPFDV 317
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.020e-40
Identity = 79/126 (62.70%), Postives = 93/126 (73.81%), Query Frame = -3 
Query:    2 GGEEGDIGLDDERYDDFQGNVDNRGSDGAPDIFEPPGHNGGASSA-RRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 376
            GG EGD GL+DE YDDFQG++D  G    P++F  P   GG SSA  RL  LHT+ PS+ASS +VEGG EKLR N KA GS FYPF TKEQQL+F+W HVHRI QRA  GL+E+  M++EGEPFDV
Sbjct:  174 GGVEGDDGLNDEGYDDFQGDIDYEGGPVEPEVFLLPEDGGGTSSAIPRLEVLHTMAPSFASSTTVEGGPEKLRYNTKAAGSPFYPFATKEQQLMFIWIHVHRIPQRAFGGLLEIFSMVHEGEPFDV 299
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5KMQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ9_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.510e-36
Identity = 72/115 (62.61%), Postives = 84/115 (73.04%), Query Frame = -3 
Query:   35 GGEEGDIGLDDERYDDFQGNVDNRGSDGAPDIFEPPGHNGGASSA-RRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVL 376
            GG EGD GL+DE YDDFQG++D  G    P++F  P   GG SSA  RL  LHT+ PS+ASS +VEGG EKLR N KA GS FYPF TKEQQL+F+W HVHRI QRA  GL+E+L
Sbjct:  186 GGVEGDDGLNDEGYDDFQGDIDYEGGPVEPEVFLLPEDGGGTSSAIPRLEVLHTMAPSFASSTTVEGGPEKLRYNTKAAGSPFYPFATKEQQLMFIWIHVHRIPQRAFGGLLEIL 300
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5KG28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG28_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.490e-25
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = -3 
Query:    2 FEPPGHNGGASSA---RRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 280
             EPP  +   SSA   RRL  LHT   SYA+S ++EGG E LR N  A+ SDFYPFRTKEQQLI++WQH H+ISQ+AL GL+++LL+  EG  FDV
Sbjct:   99 IEPPIGSDSRSSAEAMRRLENLHTHASSYAASSTMEGGPENLRHNTNAEESDFYPFRTKEQQLIWIWQHTHQISQKALGGLLDILLLEDEGNGFDV 194
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5K6W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.450e-24
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = -3 
Query:    2 FEPPGHNGGASSA---RRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 280
             EPP  +   SSA   RRL  LHT  PSYA+S ++EGG E L  +  A+ SDFYPFRTKEQQLI +WQH H+ISQ+AL GL+++LL+  EG  FDV
Sbjct:   99 LEPPIESDSRSSAEAMRRLENLHTHAPSYAASSTMEGGPENLGHSTNAEESDFYPFRTKEQQLILIWQHTHQISQKALGGLLDILLLEDEGNGFDV 194
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BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Match: A0A6H5KS83_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS83_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.440e-23
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = -3 
Query:    2 FEPPGHNGGASSA---RRLNKLHTVTPSYASSKSVEGGAEKLRENLKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLVEVLLMLYEGEPFDV 280
             EPP  +   SSA   RRL  LHT  PSYA+S ++E G E  R +  A+ SDF+PFRTKEQQLI++WQH H+ISQ+AL GL+++LL+  EG  FDV
Sbjct:   99 LEPPIESDSHSSAEAVRRLENLHTHAPSYAASSTMEDGPENHRHDTNAEESDFFPFRTKEQQLIWIWQHTHQISQKALGGLLDILLLEDEGNGFDV 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17042.5013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KE55_9PHAE5.160e-7691.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE7.920e-7192.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE3.970e-7092.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG22_9PHAE5.110e-6179.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE7.590e-4869.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2F5_9PHAE3.020e-4062.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ9_9PHAE8.510e-3662.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG28_9PHAE5.490e-2558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6W3_9PHAE1.450e-2457.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS83_9PHAE3.440e-2355.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17042contigEcto-sp13_S_contig17042:1241..1624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size386
Hectar predicted targeting categorymitochondrion
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.908277-CDS-Ecto-sp13_S_contig17042:1240..16241681462892.908277-CDS-Ecto-sp13_S_contig17042:1240..1624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17042 1241..1624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17042.5013.1prot_Ecto-sp13_S_contig17042.5013.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17042 1241..1624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17042.5013.1

>prot_Ecto-sp13_S_contig17042.5013.1 ID=prot_Ecto-sp13_S_contig17042.5013.1|Name=mRNA_Ecto-sp13_S_contig17042.5013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
VRQTVRPRTASRVLLQVLSTPFARSDVHAARRKLVVAPSYERGRNQNLGL
LSSLSISRRRPPPTYSMHKTASLCEACLTCGQMTRHHYAREARIYQVPHR
CLCCPHYPGNRRIVHRLTRCHPPRRRVP
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mRNA from alignment at Ecto-sp13_S_contig17042:1241..1624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17042.5013.1 ID=mRNA_Ecto-sp13_S_contig17042.5013.1|Name=mRNA_Ecto-sp13_S_contig17042.5013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17042:1241..1624+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACGTCAAACGGTTCGCCCTCGTACAGCATCAAGAGTACTTCTACAAGT
CCTCTCAACGCCCTTTGCGAGATCCGATGTACATGCTGCCAGACGAAAAT
TAGTTGTTGCTCCTTCGTACGAAAGGGGTAGAAATCAGAACCTTGGGCTT
TTAAGTTCTCTCTCAATTTCTCGGCGCCGCCCTCCACCGACTTACTCGAT
GCATAAGACGGCGTCACTGTGTGAAGCTTGTTTAACCTGCGGGCAGATGA
CGCGCCACCATTATGCCCGGGAGGCTCGAATATATCAGGTGCCCCATCGC
TGCCTCTGTTGTCCACATTACCCTGGAAATCGTCGTATCGTTCATCGTCT
AACCCGATGTCACCCTCCTCGCCGCCGCGTTCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17042:1241..1624+

>mRNA_Ecto-sp13_S_contig17042.5013.1 ID=mRNA_Ecto-sp13_S_contig17042.5013.1|Name=mRNA_Ecto-sp13_S_contig17042.5013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17042:1241..1624+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACGTCAAACGGTTCGCCCTCGTACAGCATCAAGAGTACTTCTACAAGT
CCTCTCAACGCCCTTTGCGAGATCCGATGTACATGCTGCCAGACGAAAAT
TAGTTGTTGCTCCTTCGTACGAAAGGGGTAGAAATCAGAACCTTGGGCTT
TTAAGTTCTCTCTCAATTTCTCGGCGCCGCCCTCCACCGACTTACTCGAT
GCATAAGACGGCGTCACTGTGTGAAGCTTGTTTAACCTGCGGGCAGATGA
CGCGCCACCATTATGCCCGGGAGGCTCGAATATATCAGGTGCCCCATCGC
TGCCTCTGTTGTCCACATTACCCTGGAAATCGTCGTATCGTTCATCGTCT
AACCCGATGTCACCCTCCTCGCCGCCGCGTTCCA
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