prot_Ecto-sp13_S_contig17030.5009.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17030.5009.1
Unique Nameprot_Ecto-sp13_S_contig17030.5009.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length203
Homology
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 1.010e-93
Identity = 167/188 (88.83%), Postives = 178/188 (94.68%), Query Frame = 0
Query:    1 MTQFAQQEKTNSTVRTTFPILRHVHSREGMGWSSRGTRRRAWRRRRLLSCLVLASTGAPLAWAQVATTCGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 188
            MT+FA+QEKTNSTVRTTF  LR+VHSREGMGWSSRGTRRRAW RRRLLSCLVLASTG PLAWAQVATTCGSSSPLRVET AEAGVLGAAVDCT+GGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV GGGQT+MFYVSSSGGLTLTDLRLSGGSAA+GGA+ +S ASV L++CVF+GN ATAG
Sbjct:    1 MTRFAKQEKTNSTVRTTFAKLRYVHSREGMGWSSRGTRRRAWYRRRLLSCLVLASTGGPLAWAQVATTCGSSSPLRVETVAEAGVLGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVLGGGQTRMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCVFNGNVATAG 188          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.120e-71
Identity = 135/162 (83.33%), Postives = 143/162 (88.27%), Query Frame = 0
Query:   30 MGWSSRGTRRRA-WRRRRLLSCL-VLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 188
            MGWSS GT+RRA +RRR LLSCL +L     P A AQVATT CGS+SPLRVET AEA  LGAAVDC NGGTVEA+WAGTVTLTAPISVG GTFLSITGE DSAEV GGGQTQMFY+SSSGGLTLTDL+LSGGSAA+GGAVYASAASVALNSCVFDGNFATAG
Sbjct:    1 MGWSSCGTQRRARYRRRWLLSCLALLVPAVVPPACAQVATTTCGSTSPLRVETVAEAEALGAAVDCANGGTVEAIWAGTVTLTAPISVGTGTFLSITGEGDSAEVLGGGQTQMFYISSSGGLTLTDLKLSGGSAASGGAVYASAASVALNSCVFDGNFATAG 162          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.740e-68
Identity = 140/162 (86.42%), Postives = 148/162 (91.36%), Query Frame = 0
Query:   30 MGWSSRGTRRRA-WRRRRLLSCL-VLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 188
            MGWSS GT+ RA +RRR LLSCL +LA    P A AQV+TT CGS+SPLRVET AEAGVLGAAVDCT+GGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV GGGQTQMFYVSSSGGLTLTDLRLSGGSAA+GGAVYASAASVALN+CVFDGNFATAG
Sbjct:    1 MGWSSCGTQWRARYRRRFLLSCLALLAPAVVPPAGAQVSTTTCGSTSPLRVETVAEAGVLGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAVYASAASVALNNCVFDGNFATAG 162          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.700e-61
Identity = 119/154 (77.27%), Postives = 131/154 (85.06%), Query Frame = 0
Query:   36 GTRRRAWRRRRLLSCLVLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 188
            GTRR+  RR  LL  LVLA      AWAQV TT CGSSSPLRVET A+AGVLGAAV+CT+GG VEAVWAG VTLTAPISVG GTFLSITGEDDSAEV GGGQTQMFYVSSSGGLTLTDL+LSGG+AA+GGA+ +S ASV L++CVF+GN ATAG
Sbjct:    6 GTRRKPRRRWLLLFVLVLALAAGLPAWAQVTTTTCGSSSPLRVETVADAGVLGAAVNCTDGGEVEAVWAGAVTLTAPISVGTGTFLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLKLSGGNAASGGAIESSMASVTLDTCVFNGNVATAG 159          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.840e-57
Identity = 119/153 (77.78%), Postives = 129/153 (84.31%), Query Frame = 0
Query:   37 TRRRAWRRRRLLSCLVLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 188
            TRR   RR  LLS LVLAS G PLAWAQVATT CGS+S LRVET  +AGVL  AV+CT+GGTVEAVWAG VTLTAPISVG GTFLSITGED SAEV GGGQTQMFYVSSSGGLTLTDLRLSGGSAA+GGA+ +S ASV L++C+F  N ATAG
Sbjct:    7 TRRNPRRRSLLLSVLVLASAGWPLAWAQVATTACGSTSSLRVETVTDAGVLSTAVNCTDGGTVEAVWAGAVTLTAPISVGTGTFLSITGEDGSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCIFSSNVATAG 159          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.530e-55
Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 0
Query:   47 LLSCLVLASTGAPL--AWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 188
            LL  L+LAS G P   A AQ+ TT C SS PLRVET AEAG LGAAV+CT GGTVE VWAG VTLTAPI+VGAGTFLSITGEDDSAEV+GGGQT+MFYVS+ GGLTLTDL+LSGGSAA+GGA+++S A+VALNSCVFDGNFATAG
Sbjct:    5 LLPALILASAGGPSSRARAQIPTTACDSSPPLRVETVAEAGALGAAVNCTGGGTVEVVWAGAVTLTAPIAVGAGTFLSITGEDDSAEVRGGGQTRMFYVSTLGGLTLTDLKLSGGSAASGGAIHSSMATVALNSCVFDGNFATAG 149          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.970e-47
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 0
Query:   47 LLSCLVLASTGAPL--AWAQVATTCGSSS---PLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAGGGGAVWAEGG 198
            LLS LVL S G P+  +WAQV   CG+SS   PLRVE++A+A VLG  V+CT GG VE VWAG +TL   ISVG+GTFLSITGE+D+A V+GGGQ +MF VS +GGLTLTDL+LSGG AA GGA+ +S A+V LNSC FDGN AT G GGAVW EGG
Sbjct:    5 LLSALVLVSAGGPIWPSWAQV-VACGTSSDTSPLRVESSADAVVLGDVVNCTGGGAVEVVWAGAITLDTAISVGSGTFLSITGENDTAGVRGGGQIRMFGVSPAGGLTLTDLKLSGGRAARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGG 160          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: A0A1Q2MDH0_9BACT (Probable pectate lyase C n=1 Tax=Limihaloglobus sulfuriphilus TaxID=1851148 RepID=A0A1Q2MDH0_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 9.880e-5
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 0
Query:  135 GQTQMFYVSSS--GGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAGGGG 191
            GQ+Q+ Y++ S  GG+TL  + LSGGS+ANGGAVYA+ +++ +  C+  GN A   GGG
Sbjct:  616 GQSQLVYINGSLGGGVTLRGVTLSGGSSANGGAVYANNSNLTIERCIIMGNSAQTNGGG 674          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FRH0_ECTSI1.010e-9388.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JB86_9PHAE2.120e-7183.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI1.740e-6886.42Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH2_ECTSI2.700e-6177.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS31_9PHAE1.840e-5777.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH3_ECTSI3.530e-5577.93Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH4_ECTSI2.970e-4765.61Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A1Q2MDH0_9BACT9.880e-549.15Probable pectate lyase C n=1 Tax=Limihaloglobus su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 59..63
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 47..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 64..203
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..63
NoneNo IPR availableTMHMMTMhelixcoord: 47..66
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 48..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17030contigEcto-sp13_S_contig17030:2987..3595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17030.5009.1mRNA_Ecto-sp13_S_contig17030.5009.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17030 2980..3595 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17030.5009.1 ID=prot_Ecto-sp13_S_contig17030.5009.1|Name=mRNA_Ecto-sp13_S_contig17030.5009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MTQFAQQEKTNSTVRTTFPILRHVHSREGMGWSSRGTRRRAWRRRRLLSC
LVLASTGAPLAWAQVATTCGSSSPLRVETAAEAGVLGAAVDCTNGGTVEA
VWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTL
TDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAGGGGAVWAEGGNL
TIV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence