mRNA_Ecto-sp13_S_contig17030.5009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17030.5009.1
Unique NamemRNA_Ecto-sp13_S_contig17030.5009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 4.280e-94
Identity = 167/188 (88.83%), Postives = 178/188 (94.68%), Query Frame = 2
Query:    8 MTQFAQQEKTNSTVRTTFPILRHVHSREGMGWSSRGTRRRAWRRRRLLSCLVLASTGAPLAWAQVATTCGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
            MT+FA+QEKTNSTVRTTF  LR+VHSREGMGWSSRGTRRRAW RRRLLSCLVLASTG PLAWAQVATTCGSSSPLRVET AEAGVLGAAVDCT+GGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV GGGQT+MFYVSSSGGLTLTDLRLSGGSAA+GGA+ +S ASV L++CVF+GN ATAG
Sbjct:    1 MTRFAKQEKTNSTVRTTFAKLRYVHSREGMGWSSRGTRRRAWYRRRLLSCLVLASTGGPLAWAQVATTCGSSSPLRVETVAEAGVLGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVLGGGQTRMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCVFNGNVATAG 188          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.280e-71
Identity = 135/162 (83.33%), Postives = 143/162 (88.27%), Query Frame = 2
Query:   95 MGWSSRGTRRRA-WRRRRLLSCL-VLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
            MGWSS GT+RRA +RRR LLSCL +L     P A AQVATT CGS+SPLRVET AEA  LGAAVDC NGGTVEA+WAGTVTLTAPISVG GTFLSITGE DSAEV GGGQTQMFY+SSSGGLTLTDL+LSGGSAA+GGAVYASAASVALNSCVFDGNFATAG
Sbjct:    1 MGWSSCGTQRRARYRRRWLLSCLALLVPAVVPPACAQVATTTCGSTSPLRVETVAEAEALGAAVDCANGGTVEAIWAGTVTLTAPISVGTGTFLSITGEGDSAEVLGGGQTQMFYISSSGGLTLTDLKLSGGSAASGGAVYASAASVALNSCVFDGNFATAG 162          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.880e-68
Identity = 140/162 (86.42%), Postives = 148/162 (91.36%), Query Frame = 2
Query:   95 MGWSSRGTRRRA-WRRRRLLSCL-VLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
            MGWSS GT+ RA +RRR LLSCL +LA    P A AQV+TT CGS+SPLRVET AEAGVLGAAVDCT+GGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV GGGQTQMFYVSSSGGLTLTDLRLSGGSAA+GGAVYASAASVALN+CVFDGNFATAG
Sbjct:    1 MGWSSCGTQWRARYRRRFLLSCLALLAPAVVPPAGAQVSTTTCGSTSPLRVETVAEAGVLGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAVYASAASVALNNCVFDGNFATAG 162          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.900e-61
Identity = 119/154 (77.27%), Postives = 131/154 (85.06%), Query Frame = 2
Query:  113 GTRRRAWRRRRLLSCLVLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
            GTRR+  RR  LL  LVLA      AWAQV TT CGSSSPLRVET A+AGVLGAAV+CT+GG VEAVWAG VTLTAPISVG GTFLSITGEDDSAEV GGGQTQMFYVSSSGGLTLTDL+LSGG+AA+GGA+ +S ASV L++CVF+GN ATAG
Sbjct:    6 GTRRKPRRRWLLLFVLVLALAAGLPAWAQVTTTTCGSSSPLRVETVADAGVLGAAVNCTDGGEVEAVWAGAVTLTAPISVGTGTFLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLKLSGGNAASGGAIESSMASVTLDTCVFNGNVATAG 159          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.990e-57
Identity = 119/153 (77.78%), Postives = 129/153 (84.31%), Query Frame = 2
Query:  116 TRRRAWRRRRLLSCLVLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
            TRR   RR  LLS LVLAS G PLAWAQVATT CGS+S LRVET  +AGVL  AV+CT+GGTVEAVWAG VTLTAPISVG GTFLSITGED SAEV GGGQTQMFYVSSSGGLTLTDLRLSGGSAA+GGA+ +S ASV L++C+F  N ATAG
Sbjct:    7 TRRNPRRRSLLLSVLVLASAGWPLAWAQVATTACGSTSSLRVETVTDAGVLSTAVNCTDGGTVEAVWAGAVTLTAPISVGTGTFLSITGEDGSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCIFSSNVATAG 159          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.810e-55
Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 2
Query:  146 LLSCLVLASTGAPL--AWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
            LL  L+LAS G P   A AQ+ TT C SS PLRVET AEAG LGAAV+CT GGTVE VWAG VTLTAPI+VGAGTFLSITGEDDSAEV+GGGQT+MFYVS+ GGLTLTDL+LSGGSAA+GGA+++S A+VALNSCVFDGNFATAG
Sbjct:    5 LLPALILASAGGPSSRARAQIPTTACDSSPPLRVETVAEAGALGAAVNCTGGGTVEVVWAGAVTLTAPIAVGAGTFLSITGEDDSAEVRGGGQTRMFYVSTLGGLTLTDLKLSGGSAASGGAIHSSMATVALNSCVFDGNFATAG 149          
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 3.200e-47
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 2
Query:  146 LLSCLVLASTGAPL--AWAQVATTCGSSS---PLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAGGGGAVWAEGG 601
            LLS LVL S G P+  +WAQV   CG+SS   PLRVE++A+A VLG  V+CT GG VE VWAG +TL   ISVG+GTFLSITGE+D+A V+GGGQ +MF VS +GGLTLTDL+LSGG AA GGA+ +S A+V LNSC FDGN AT G GGAVW EGG
Sbjct:    5 LLSALVLVSAGGPIWPSWAQV-VACGTSSDTSPLRVESSADAVVLGDVVNCTGGGAVEVVWAGAITLDTAISVGSGTFLSITGENDTAGVRGGGQIRMFGVSPAGGLTLTDLKLSGGRAARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGG 160          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRH0_ECTSI4.280e-9488.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JB86_9PHAE2.280e-7183.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI1.880e-6886.42Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH2_ECTSI2.900e-6177.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS31_9PHAE1.990e-5777.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH3_ECTSI3.810e-5577.93Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH4_ECTSI3.200e-4765.61Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17030contigEcto-sp13_S_contig17030:2980..3595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score68.9
Seed ortholog evalue3e-09
Seed eggNOG ortholog2880.D8LNY1
Model size616
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2BFIX@1,2S176@2759
Cds size609
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.5562963-UTR-Ecto-sp13_S_contig17030:2979..29861681462892.5562963-UTR-Ecto-sp13_S_contig17030:2979..2986Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17030 2980..2986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.567139-CDS-Ecto-sp13_S_contig17030:2986..35951681462892.567139-CDS-Ecto-sp13_S_contig17030:2986..3595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17030 2987..3595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17030.5009.1prot_Ecto-sp13_S_contig17030.5009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17030 2987..3595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17030.5009.1

>prot_Ecto-sp13_S_contig17030.5009.1 ID=prot_Ecto-sp13_S_contig17030.5009.1|Name=mRNA_Ecto-sp13_S_contig17030.5009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MTQFAQQEKTNSTVRTTFPILRHVHSREGMGWSSRGTRRRAWRRRRLLSC
LVLASTGAPLAWAQVATTCGSSSPLRVETAAEAGVLGAAVDCTNGGTVEA
VWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTL
TDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAGGGGAVWAEGGNL
TIV
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mRNA from alignment at Ecto-sp13_S_contig17030:2980..3595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17030.5009.1 ID=mRNA_Ecto-sp13_S_contig17030.5009.1|Name=mRNA_Ecto-sp13_S_contig17030.5009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17030:2980..3595+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTCCATGACCCAGTTCGCCCAGCAGGAGAAAACCAACTCCACAGTAC GAACCACCTTCCCAATACTGAGGCACGTCCACAGCAGAGAGGGCATGGGG TGGAGCTCCCGCGGCACCCGACGACGAGCATGGCGCCGCCGCCGCCTGCT CTCATGTCTGGTGCTAGCCTCGACGGGAGCGCCACTGGCATGGGCGCAAG TAGCGACCACATGTGGCAGCAGCTCACCGCTCCGAGTAGAAACCGCGGCC GAAGCGGGTGTACTCGGCGCCGCCGTTGACTGCACGAATGGCGGGACAGT GGAGGCCGTTTGGGCGGGGACGGTTACTCTCACGGCTCCTATTTCTGTCG GGGCGGGGACGTTTCTTTCAATCACCGGAGAAGACGACTCGGCCGAGGTA CAGGGCGGCGGCCAGACCCAGATGTTCTACGTGTCATCGTCGGGAGGCCT GACGCTGACCGATCTCAGGCTCTCGGGAGGAAGCGCTGCAAACGGCGGCG CCGTTTACGCCAGCGCGGCATCGGTCGCCCTCAACAGTTGTGTCTTCGAC GGCAACTTCGCAACCGCCGGGGGCGGAGGGGCCGTGTGGGCGGAGGGCGG GAACCTAACAATAGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17030:2980..3595+

>mRNA_Ecto-sp13_S_contig17030.5009.1 ID=mRNA_Ecto-sp13_S_contig17030.5009.1|Name=mRNA_Ecto-sp13_S_contig17030.5009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17030:2980..3595+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCAGTTCGCCCAGCAGGAGAAAACCAACTCCACAGTACGAACCAC
CTTCCCAATACTGAGGCACGTCCACAGCAGAGAGGGCATGGGGTGGAGCT
CCCGCGGCACCCGACGACGAGCATGGCGCCGCCGCCGCCTGCTCTCATGT
CTGGTGCTAGCCTCGACGGGAGCGCCACTGGCATGGGCGCAAGTAGCGAC
CACATGTGGCAGCAGCTCACCGCTCCGAGTAGAAACCGCGGCCGAAGCGG
GTGTACTCGGCGCCGCCGTTGACTGCACGAATGGCGGGACAGTGGAGGCC
GTTTGGGCGGGGACGGTTACTCTCACGGCTCCTATTTCTGTCGGGGCGGG
GACGTTTCTTTCAATCACCGGAGAAGACGACTCGGCCGAGGTACAGGGCG
GCGGCCAGACCCAGATGTTCTACGTGTCATCGTCGGGAGGCCTGACGCTG
ACCGATCTCAGGCTCTCGGGAGGAAGCGCTGCAAACGGCGGCGCCGTTTA
CGCCAGCGCGGCATCGGTCGCCCTCAACAGTTGTGTCTTCGACGGCAACT
TCGCAACCGCCGGGGGCGGAGGGGCCGTGTGGGCGGAGGGCGGGAACCTA
ACAATAGTC
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