mRNA_Ecto-sp13_S_contig17030.5009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 310 bits (793), Expect = 4.280e-94 Identity = 167/188 (88.83%), Postives = 178/188 (94.68%), Query Frame = 2
Query: 8 MTQFAQQEKTNSTVRTTFPILRHVHSREGMGWSSRGTRRRAWRRRRLLSCLVLASTGAPLAWAQVATTCGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
MT+FA+QEKTNSTVRTTF LR+VHSREGMGWSSRGTRRRAW RRRLLSCLVLASTG PLAWAQVATTCGSSSPLRVET AEAGVLGAAVDCT+GGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV GGGQT+MFYVSSSGGLTLTDLRLSGGSAA+GGA+ +S ASV L++CVF+GN ATAG
Sbjct: 1 MTRFAKQEKTNSTVRTTFAKLRYVHSREGMGWSSRGTRRRAWYRRRLLSCLVLASTGGPLAWAQVATTCGSSSPLRVETVAEAGVLGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVLGGGQTRMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCVFNGNVATAG 188
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE) HSP 1 Score: 229 bits (585), Expect = 2.280e-71 Identity = 135/162 (83.33%), Postives = 143/162 (88.27%), Query Frame = 2
Query: 95 MGWSSRGTRRRA-WRRRRLLSCL-VLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
MGWSS GT+RRA +RRR LLSCL +L P A AQVATT CGS+SPLRVET AEA LGAAVDC NGGTVEA+WAGTVTLTAPISVG GTFLSITGE DSAEV GGGQTQMFY+SSSGGLTLTDL+LSGGSAA+GGAVYASAASVALNSCVFDGNFATAG
Sbjct: 1 MGWSSCGTQRRARYRRRWLLSCLALLVPAVVPPACAQVATTTCGSTSPLRVETVAEAEALGAAVDCANGGTVEAIWAGTVTLTAPISVGTGTFLSITGEGDSAEVLGGGQTQMFYISSSGGLTLTDLKLSGGSAASGGAVYASAASVALNSCVFDGNFATAG 162
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.880e-68 Identity = 140/162 (86.42%), Postives = 148/162 (91.36%), Query Frame = 2
Query: 95 MGWSSRGTRRRA-WRRRRLLSCL-VLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
MGWSS GT+ RA +RRR LLSCL +LA P A AQV+TT CGS+SPLRVET AEAGVLGAAVDCT+GGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEV GGGQTQMFYVSSSGGLTLTDLRLSGGSAA+GGAVYASAASVALN+CVFDGNFATAG
Sbjct: 1 MGWSSCGTQWRARYRRRFLLSCLALLAPAVVPPAGAQVSTTTCGSTSPLRVETVAEAGVLGAAVDCTDGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAVYASAASVALNNCVFDGNFATAG 162
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI) HSP 1 Score: 204 bits (519), Expect = 2.900e-61 Identity = 119/154 (77.27%), Postives = 131/154 (85.06%), Query Frame = 2
Query: 113 GTRRRAWRRRRLLSCLVLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
GTRR+ RR LL LVLA AWAQV TT CGSSSPLRVET A+AGVLGAAV+CT+GG VEAVWAG VTLTAPISVG GTFLSITGEDDSAEV GGGQTQMFYVSSSGGLTLTDL+LSGG+AA+GGA+ +S ASV L++CVF+GN ATAG
Sbjct: 6 GTRRKPRRRWLLLFVLVLALAAGLPAWAQVTTTTCGSSSPLRVETVADAGVLGAAVNCTDGGEVEAVWAGAVTLTAPISVGTGTFLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLKLSGGNAASGGAIESSMASVTLDTCVFNGNVATAG 159
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 205 bits (521), Expect = 1.990e-57 Identity = 119/153 (77.78%), Postives = 129/153 (84.31%), Query Frame = 2
Query: 116 TRRRAWRRRRLLSCLVLASTGAPLAWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
TRR RR LLS LVLAS G PLAWAQVATT CGS+S LRVET +AGVL AV+CT+GGTVEAVWAG VTLTAPISVG GTFLSITGED SAEV GGGQTQMFYVSSSGGLTLTDLRLSGGSAA+GGA+ +S ASV L++C+F N ATAG
Sbjct: 7 TRRNPRRRSLLLSVLVLASAGWPLAWAQVATTACGSTSSLRVETVTDAGVLSTAVNCTDGGTVEAVWAGAVTLTAPISVGTGTFLSITGEDGSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCIFSSNVATAG 159
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 198 bits (504), Expect = 3.810e-55 Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 2
Query: 146 LLSCLVLASTGAPL--AWAQVATT-CGSSSPLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAG 571
LL L+LAS G P A AQ+ TT C SS PLRVET AEAG LGAAV+CT GGTVE VWAG VTLTAPI+VGAGTFLSITGEDDSAEV+GGGQT+MFYVS+ GGLTLTDL+LSGGSAA+GGA+++S A+VALNSCVFDGNFATAG
Sbjct: 5 LLPALILASAGGPSSRARAQIPTTACDSSPPLRVETVAEAGALGAAVNCTGGGTVEVVWAGAVTLTAPIAVGAGTFLSITGEDDSAEVRGGGQTRMFYVSTLGGLTLTDLKLSGGSAASGGAIHSSMATVALNSCVFDGNFATAG 149
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 176 bits (445), Expect = 3.200e-47 Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 2
Query: 146 LLSCLVLASTGAPL--AWAQVATTCGSSS---PLRVETAAEAGVLGAAVDCTNGGTVEAVWAGTVTLTAPISVGAGTFLSITGEDDSAEVQGGGQTQMFYVSSSGGLTLTDLRLSGGSAANGGAVYASAASVALNSCVFDGNFATAGGGGAVWAEGG 601
LLS LVL S G P+ +WAQV CG+SS PLRVE++A+A VLG V+CT GG VE VWAG +TL ISVG+GTFLSITGE+D+A V+GGGQ +MF VS +GGLTLTDL+LSGG AA GGA+ +S A+V LNSC FDGN AT G GGAVW EGG
Sbjct: 5 LLSALVLVSAGGPIWPSWAQV-VACGTSSDTSPLRVESSADAVVLGDVVNCTGGGAVEVVWAGAITLDTAISVGSGTFLSITGENDTAGVRGGGQIRMFGVSPAGGLTLTDLKLSGGRAARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGG 160 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17030.5009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17030.5009.1 >prot_Ecto-sp13_S_contig17030.5009.1 ID=prot_Ecto-sp13_S_contig17030.5009.1|Name=mRNA_Ecto-sp13_S_contig17030.5009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp MTQFAQQEKTNSTVRTTFPILRHVHSREGMGWSSRGTRRRAWRRRRLLSCback to top mRNA from alignment at Ecto-sp13_S_contig17030:2980..3595+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17030.5009.1 ID=mRNA_Ecto-sp13_S_contig17030.5009.1|Name=mRNA_Ecto-sp13_S_contig17030.5009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17030:2980..3595+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17030:2980..3595+ >mRNA_Ecto-sp13_S_contig17030.5009.1 ID=mRNA_Ecto-sp13_S_contig17030.5009.1|Name=mRNA_Ecto-sp13_S_contig17030.5009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17030:2980..3595+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |