mRNA_Ecto-sp13_S_contig17019.5005.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17019.5005.1
Unique NamemRNA_Ecto-sp13_S_contig17019.5005.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17019.5005.1 vs. uniprot
Match: A0A6H5KUD7_9PHAE (GT31 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD7_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 5.020e-70
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 1 
Query:   13 QTRTAAEVTNLAICILTRRSEWQRRHLLRQTWLQDVPDGVRVSHIFVMGEDRSYTVEENARLAAEVGAHRDILIAPVEEARDTASERTKHCIHWTTENHEFDLLVKADDDSTLFLSRLF 369
            QTRTAAEVTNLAICILTRRSEWQRRHLLRQTWLQDVPDGVRVSHIFVMGEDRSYT EENARLAAE  AHRDILIAPVEEARDTASERTKHCIHWTTE+HEFDLLVKADDDSTLFLSRLF
Sbjct:   44 QTRTAAEVTNLAICILTRRSEWQRRHLLRQTWLQDVPDGVRVSHIFVMGEDRSYTAEENARLAAEAEAHRDILIAPVEEARDTASERTKHCIHWTTEHHEFDLLVKADDDSTLFLSRLF 162
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BLAST of mRNA_Ecto-sp13_S_contig17019.5005.1 vs. uniprot
Match: UPI0005F3DD41 (beta-1,3-galactosyltransferase 6 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F3DD41)

HSP 1 Score: 59.7 bits (143), Expect = 5.600e-8
Identity = 32/109 (29.36%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:   43 LAICILTRRSEWQRRHLLRQTWLQDVPDGVRVSHIFVMGEDRSYTVEENARLAAEVGAHRDILIAP-VEEARDTASERTKHCIHWTTENHEFDLLVKADDDSTLFLSRL 366
            L + +L+     +RR  +R+TWL D   G  V ++FV+G  +    E+   L +E     D+L+ P ++++  T +++  H +    E H+FD L+K DDDS + + ++
Sbjct:   65 LVVLVLSGPDNLERRDTIRKTWLADHVQGATVRYLFVVGT-QDILPEQRNTLQSEKDKFDDLLLLPRLQDSYGTLTKKVLHALKAAHERHDFDYLLKCDDDSYVLVHKI 172
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BLAST of mRNA_Ecto-sp13_S_contig17019.5005.1 vs. uniprot
Match: A0A1X2G4L0_9FUNG (Hexosyltransferase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G4L0_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-5
Identity = 38/114 (33.33%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:   37 TNLAICILTRRSEWQRRHLLRQTWLQDVPDGVRVSHIFVMGEDRSYTVEENARLAAEVGAHRDILIAPVEEARDTASERTKHCIHWTTE---NHEFDLLVKADDDSTLFLSRLF 369
            T + I I T    ++RR L+R T+LQ +PD V     FVMG D             E+  + DIL   +EE  +    +T        +   +H  D ++KADDDS L+L RL+
Sbjct:   18 TQIFIGIFTTAKGFERRQLIRNTYLQHIPDNVMYK--FVMGNDAPRD---------EIDTYHDILPLDIEENMNEG--KTYEYFKLMADVFRDHPVDFVLKADDDSYLYLDRLY 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17019.5005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUD7_9PHAE5.020e-7096.64GT31 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
UPI0005F3DD415.600e-829.36beta-1,3-galactosyltransferase 6 n=1 Tax=Vollenhov... [more]
A0A1X2G4L0_9FUNG2.920e-533.33Hexosyltransferase n=1 Tax=Hesseltinella vesiculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17019contigEcto-sp13_S_contig17019:95..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size369
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.283296-CDS-Ecto-sp13_S_contig17019:94..4631681462892.283296-CDS-Ecto-sp13_S_contig17019:94..463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17019 95..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17019.5005.1prot_Ecto-sp13_S_contig17019.5005.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17019 95..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17019.5005.1

>prot_Ecto-sp13_S_contig17019.5005.1 ID=prot_Ecto-sp13_S_contig17019.5005.1|Name=mRNA_Ecto-sp13_S_contig17019.5005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
RRPTQTRTAAEVTNLAICILTRRSEWQRRHLLRQTWLQDVPDGVRVSHIF
VMGEDRSYTVEENARLAAEVGAHRDILIAPVEEARDTASERTKHCIHWTT
ENHEFDLLVKADDDSTLFLSRLF
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mRNA from alignment at Ecto-sp13_S_contig17019:95..463-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17019.5005.1 ID=mRNA_Ecto-sp13_S_contig17019.5005.1|Name=mRNA_Ecto-sp13_S_contig17019.5005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17019:95..463- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCGCCCCACCCAGACACGCACCGCGGCGGAAGTAACGAACCTAGCAAT
ATGCATCTTGACGCGGCGGAGCGAATGGCAGAGGCGACACCTCTTGCGGC
AGACATGGCTCCAAGACGTCCCGGACGGAGTGCGCGTGTCGCATATCTTC
GTGATGGGGGAGGACCGGAGCTACACCGTGGAGGAGAACGCTCGCCTTGC
CGCGGAGGTGGGGGCGCACCGGGACATCCTGATCGCTCCCGTAGAGGAAG
CCAGAGACACGGCGTCCGAGAGGACCAAGCACTGCATCCACTGGACCACG
GAGAACCACGAATTTGACCTTCTGGTCAAGGCTGACGACGACAGCACCCT
GTTCCTGTCGCGCTTGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17019:95..463-

>mRNA_Ecto-sp13_S_contig17019.5005.1 ID=mRNA_Ecto-sp13_S_contig17019.5005.1|Name=mRNA_Ecto-sp13_S_contig17019.5005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17019:95..463- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCGCCCCACCCAGACACGCACCGCGGCGGAAGTAACGAACCTAGCAAT
ATGCATCTTGACGCGGCGGAGCGAATGGCAGAGGCGACACCTCTTGCGGC
AGACATGGCTCCAAGACGTCCCGGACGGAGTGCGCGTGTCGCATATCTTC
GTGATGGGGGAGGACCGGAGCTACACCGTGGAGGAGAACGCTCGCCTTGC
CGCGGAGGTGGGGGCGCACCGGGACATCCTGATCGCTCCCGTAGAGGAAG
CCAGAGACACGGCGTCCGAGAGGACCAAGCACTGCATCCACTGGACCACG
GAGAACCACGAATTTGACCTTCTGGTCAAGGCTGACGACGACAGCACCCT
GTTCCTGTCGCGCTTGTTC
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